Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1919 ATGGGAATCTCAAACATTACAGGTGAAGATCTTGGCAACTTGTCTTCAGCAAATAGTGTGGAAGATCAAGAAGTTGAACAAAACAATCAGCATCATCATCAACTCCTCAATCACTTCCTCTATGGCTCTCCCAATGAAGATCAAACCAACACCCATGCCTCATCTTCACTTCACCAACAAAGACTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGGCAAATCCCGCTCATCGATCCTTTATTTGTCGAGAATACATCCAAATGCTGAAGTTATTGCTCTATCACCAACAACCCTAATGGCCACAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGATTTCAAAGGGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAAGGTCTACGTGTGCCCCGAACCGACGTGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAGTCTGATTGGAAAGCTCATCAAAAGACCTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTGTGTTTTCCAGAAGAGACAGTTTCATCACCCACAGAGCTTTCTGCGATGCATTAACAGAAGACAACAGCAAACTAAATCAAGGACTTCTGAACAACAATAACATAGAACCAATCTCAATCTCCACTTCAAAACTCCCTCATTTTGGCCCATCAGTAATGGCTGAATTCAACCCTTACGATCACAGCAAAAACCACCCTTTCAAAACCCTCCCTCAAGAACTCAATAATAACTCGAGCCCGTTCGCCACCACCACCGGTGCACCGGGAGGCTTGTTCGTGGCCGGAGCGAGAACCAGCACCGCTCCCTCTTTCTCAAGCCTTCAGCTCAGTTCTGCCACCTCTTCGCGCTTCAGTTGCCTTCATGACACCAAAACTGGCTGCATCCAGGTTTCAGGGTCAGCGACCGCATCGCTCGTAACATCGGCCACCGCCTTGCTGCAGAAAGCTGCGCAGATAGGAGCCACTACAAGCTCCATTGGTGGTTTGAACTCACCATTGGAAACATCACATTCTGATCAACGACCGGACATGGTAGGGATGAATATGGAAATGTACGGACAGATGATGATGATGAAAGAACAAGATAGTTGTAGTACTAGCAGCTCGAGTTTTTCCGTCCTCGAAAAGGGCCAATGGCGACCAGTATCGAGGTTTTCGGGTGGCGGTAGCGGCAAAGAGAGTCAGATGATGACTCTGGATTTGTTGGGAGATCAAGGAGGGTGGAGGCTGAGGCAGTTGCAGGAGGATCAAAGCCAGCATCACCACCAGCAGATGGTACCAATTATGAAGCCTTTTGAGCTGCAGAACTTTCATGGGGATTCAAATGTTAACAAATCCATATTTGAGTTCTGA 1494 46.72 MGISNITGEDLGNLSSANSVEDQEVEQNNQHHHQLLNHFLYGSPNEDQTNTHASSSLHQQRLKKKRNLPGTPGKSRSSILYLSRIHPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKKVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHQKTCGTREYKCDCGTVFSRRDSFITHRAFCDALTEDNSKLNQGLLNNNNIEPISISTSKLPHFGPSVMAEFNPYDHSKNHPFKTLPQELNNNSSPFATTTGAPGGLFVAGARTSTAPSFSSLQLSSATSSRFSCLHDTKTGCIQVSGSATASLVTSATALLQKAAQIGATTSSIGGLNSPLETSHSDQRPDMVGMNMEMYGQMMMMKEQDSCSTSSSSFSVLEKGQWRPVSRFSGGGSGKESQMMTLDLLGDQGGWRLRQLQEDQSQHHHQQMVPIMKPFELQNFHGDSNVNKSIFEF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76272446 76276473 + Hsped.03g19190.1 Hepe03g1919 566917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1919 497 SUPERFAMILY beta-beta-alpha zinc fingers 104 202 IPR036236 -
Hepe03g1919 497 FunFam protein indeterminate-domain 12-like 84 152 - -
Hepe03g1919 497 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 207 247 - -
Hepe03g1919 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 464 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe03g1919 497 FunFam protein indeterminate-domain 5, chloroplastic-like 159 238 - -
Hepe03g1919 497 Pfam Zinc-finger of C2H2 type 105 127 IPR013087 -
Hepe03g1919 497 MobiDBLite consensus disorder prediction 1 76 - -
Hepe03g1919 497 MobiDBLite consensus disorder prediction 32 57 - -
Hepe03g1919 497 MobiDBLite consensus disorder prediction 1 24 - -
Hepe03g1919 497 Gene3D Classic Zinc Finger 159 238 - -
Hepe03g1919 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Hepe03g1919 497 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 180 204 - -
Hepe03g1919 497 SMART c2h2final6 105 127 IPR013087 -
Hepe03g1919 497 SMART c2h2final6 146 176 IPR013087 -
Hepe03g1919 497 SMART c2h2final6 181 201 IPR013087 -
Hepe03g1919 497 Gene3D Classic Zinc Finger 87 152 - -
Hepe03g1919 497 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Hepe03g1919 497 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 142 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1919 Hepe-Chr3:76272446 Hepe03g2035 Hepe-Chr3:77745861 1.83e-98 dispersed
Hepe03g1919 Hepe-Chr3:76272446 Hepe04g1493 Hepe-Chr4:70556596 5.09e-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55326 PF00096 zf-C2H2 0.005 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1919 - - - 0.0