Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1963 ATGTCCATTTCTCCCCACCCATTTCTCCTTCTTCTTCTCACTATAGCCTCACTCTCCGCCGCCGCCTCCGCCGCCGAATGTCCTCTCAACTTCACCGTCCTCCGCCAATTCTCTCAGGGCTCCGCCGGTTCCCGCCCCGATTTCTCCGACGAATGCCAATACATCCGCCTCGGTCTCCGACTTGTCCTCTCTCAGTACCTCAAACTCACCGGCTCCTTCTTGCCCCCGGTGAACTCCTCCGATTCATGCTGGAATTCTTACCAATCGGTTGTTAATGGGTCTTGGCCGAATTTCAATATTCGGACCTCTTGCGGGTTTCAAACCGGGTGGATCTCACAAGGCTGTATGAACATCACTACCAAATCGGAGTTCGAGAGAATCGTTCCTAAATCGGCGATCGATGGCGTTGCTGCGAACTGTAATCAATCTCTCGAAAATGGTTCCCCCTGTGCCTCTTGCACGACGAGGCTCTCGATCGTTCAAGCCTCGTTCTTGACCGGTTCGTCGATCGGCAATGTTACCGATTGCCAAGCATATCCGTCGATCTACGCGGCGGCGTTCGCGAATCAGTTCGGACCGACGGATTGGGGAACTGCCAAATGCTTGTTCTCGCTTAATTCTCTGTCGCCCGGGGATTCAAAAAGCAAGAAGCGGAGGAATACGGTGGTTTTGGTGGTTCTGATTTGTTGTGGAGTTGCGGCGGCGGCGGTCGTCGCCGCCGGCGGGTGGTTTTTCTGGTGGAAACAGAGGAAATCGAAGAAGAACGATAGAATTCGTAGAGTTGAGACGGGTTTTGCTTCTGGATTGGAGTCAATAAGTGCTAGTACTACGTTGGTGAAGTTCTCATTTGATGAAATCAAGAGGGCTACCAGGAATTTCTCTAGAGATTACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGATTCTATCAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGACGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTGTTAGGCATGTTAATCTTGTTGCTTTGAGAGGTTATTGCATTGCAACTACATCATTAGAGGGTCATCAAAGGATAATTGTGTGTGATTTAATGAAGAATGGGAGTCTTTATGATCATTTGTTTGGGTATTCTGATGAGAGATTGAGTTGGCCAATTCGGCAGAAGATTGCTTTAGGAACAGCTAGGGGATTGGCGTATCTCCATTCTGGAGCTCAGCCTGGCATTATTCATAGAGATATTAAAGCTAGCAACATTCTTTTGGATGAAAATTTTGACCCCAAAGTGGCTGATTTTGGTTTGGCTAAGTTCACTCCAGAAGGAATGACTCATCTGAGCACAAGGGTTGCTGGGACTATGGGGTATGTGGCACCCGAGTACGCGCTGTACGGTCAGTTGACGGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTGCTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAGGAGCCATGATAGTCAGCCATTTCTAGTGACTGATTGGGCTTGGTCTCTAGTGAGGGAACAAAAGGCAATGGATGTTGTTGAAGAAAACATGCCAGAGCTGGGTTCCCCTGAGGTTGTTGAGAAGTATGTATTGATTGCTGTTCTTTGTTCCCATCCTCAGCTATATGCTAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGACCTCTCTGTTCCTTCAATCCCTGAAAGACCCATCCCTCTGGTTGCTGATATTGATGAAATTGAGAGATCTATGAGTAGTAGTAGCTCTGCTCAGCATTCTGGTTCTGTTGGTTTTCATAGTTACACATTACAAACTGACCACAAGTAG 1860 47.69 MSISPHPFLLLLLTIASLSAAASAAECPLNFTVLRQFSQGSAGSRPDFSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSVVNGSWPNFNIRTSCGFQTGWISQGCMNITTKSEFERIVPKSAIDGVAANCNQSLENGSPCASCTTRLSIVQASFLTGSSIGNVTDCQAYPSIYAAAFANQFGPTDWGTAKCLFSLNSLSPGDSKSKKRRNTVVLVVLICCGVAAAAVVAAGGWFFWWKQRKSKKNDRIRRVETGFASGLESISASTTLVKFSFDEIKRATRNFSRDYIIGRGGYGNVYKGILSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTSLEGHQRIIVCDLMKNGSLYDHLFGYSDERLSWPIRQKIALGTARGLAYLHSGAQPGIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWSLVREQKAMDVVEENMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETDLSVPSIPERPIPLVADIDEIERSMSSSSSAQHSGSVGFHSYTLQTDHK 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76764967 76767520 + Hsped.03g19630.1 Hepe03g1963 566961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1963 619 MobiDBLite consensus disorder prediction 593 619 - -
Hepe03g1963 619 CDD STKc_IRAK 299 569 - -
Hepe03g1963 619 SUPERFAMILY Protein kinase-like (PK-like) 277 599 IPR011009 -
Hepe03g1963 619 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 254 372 - -
Hepe03g1963 619 PANTHER OS01G0750732 PROTEIN 49 599 IPR050885 -
Hepe03g1963 619 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524(InterPro)
Hepe03g1963 619 SMART serkin_6 293 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1963 619 MobiDBLite consensus disorder prediction 593 613 - -
Hepe03g1963 619 Gene3D Phosphorylase Kinase; domain 1 255 372 - -
Hepe03g1963 619 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1963 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1963 619 Pfam SPARK 23 176 IPR043891 -
Hepe03g1963 619 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 374 576 - -
Hepe03g1963 619 Gene3D Transferase(Phosphotransferase) domain 1 374 574 - -
Hepe03g1963 619 Pfam Protein kinase domain 296 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1963 Hepe-Chr3:76764967 Hepe07g0502 Hepe-Chr7:5285970 1.74e-106 dispersed
Hepe03g1963 Hepe-Chr3:76764967 Hepe05g0096 Hepe-Chr5:1032716 2.35e-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72687 PF00069 Pkinase 3.00E-41 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1963 - - - 0.0