Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1971 ATGCTTCCGTGGGGAGGTATTAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCAGAGATGCGGAGTTACTGAAATCTGTCACGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCTGAATGTGTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTGTGATACACCGATAAATTGCGAGTTTAGTGGTTTGCGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTAAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCCCTGATGCTCTCCATGAGTAAAGAAGTTCCTTGGCATCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCTCGAAGCGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTATTTGAAGAGTCTGGCAGATCCCTTATGCGTGGCACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATCGAGCGTGTACTACCTACTGGTACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACCGTCAGAATTCAACGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACGATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGTTTGAGCATATTTGGTTTGTATCTGGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGACGTCGCTGGGAATTGCAGAAAAGAGTGCTAGCTGCAGCTGCCAAGAGATCAAGCGAAAATGAAGGGGAAAGTGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGACCGGTCAATGCCAGACCTTTGTGTAATATGTCTCGAGAGAGACTACAACGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTCGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTGGTTGTAAAAACTTTCCGCCATTGA 1026 46.1 MLPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLEAECVLPLVVAISGRVSCDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWHLDDGTGRAFVVGARSATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTVRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLSIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSENEGESEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76886210 76896347 - Hsped.03g19710.1 Hepe03g1971 566969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1971 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 333 - -
Hepe03g1971 341 MobiDBLite consensus disorder prediction 266 285 - -
Hepe03g1971 341 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Hepe03g1971 341 SUPERFAMILY RING/U-box 293 335 - -
Hepe03g1971 341 PANTHER - 1 337 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe03g1971 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Hepe03g1971 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 340 IPR013083 -
Hepe03g1971 341 MobiDBLite consensus disorder prediction 268 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1659 Hepe-Chr5:66490423 Hepe03g1971 Hepe-Chr3:76886210 5.62e-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1971 K15688 - csv:101218196 655.595