Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g2009 | ATGGCCGCTTTTAGAACCTTGTTTGTCTGTTTGTTGTTGTTTGTCGTTGATGCCAATGATCAACAACAACTTGTTGTCAATCAGGCTGATGATAAATATTGGCAGAATCGTGCCGTCGAAGCTAAGAAGGTTGCTCAAGATGCTTATAATCCCAACCCTGAAGCTGTTACCGAAAACTTCAACGCCGCTGTCGGCAGGGAGCTGCTGGGCAGCAACAATACGAGAAGAAGCTTGCAGAAATACAAAGGTCCATGCTTGGCCACGAACCCGATCGATCGATGCTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCTGAATGCCCATTGGGGTTCGGCCACAAGACGATTGGCGGAAAAAGGGGACCAATCTACGTAGTGACGGATGCCTCTGACAACGATCTGTTGAACCCGAAGCTAGGAACCCTACGCCATGCCGTCATCCAAAAAGGACCACTTTGGATCATCTTCGGGCGTAGCATGGTCATCCAACTCACCGAAGAGCTGATGATCTCAAGCAACAAGACCATTGACGGTCGCGGCGCAAACGTCCACATTGCCTTCGGCGCCGGCCTCACCGTTCAGTTTGTCAACAATGTCATCATCCATGGGATTCACGTCCATGATACCATCTCCAAACCTGGTGGGATGATTAGAGATTCTGTTGATCATTACGGGTTTAGAACTGTGAGTGATGGCGATGGCATCTCCATCTTTGGCGGTTCTCATGTTTGGATTGACCATGTTTCCATGTACAATTGCCAAGATGGCCTCATTGATGCCATCATGGGTTCCACGGCCATCACCATCTCCAACTCCCATTTCACTCACCACAACGAGGTGATGTTGTTCGGCGCGAGTGATAGTTATTCCGAAGACAAGGTTATGCAAATAACCCTTGCATTCAACCACTTTGGTAGGGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTAGTTAACAATGACTATACCCATTGGCTTATGTATGCCATTGGTGGTAGCCAACATCCCACCATCCTTAGCCAAGGCAACCGTTTCTTTGCACCTCCTAACCCTAATGCAAAAGAGATAACAAAGAGAGATTATGCAACGGAGAGCGAGTGGATGAACTGGTCATGGAAATCGGAGGGAGATTTGATGGTGAATGGAGCACACTTTTCTACATCGGGAGACCAAAGCAAAAGCAATACAAAAGCGTTCTCAAGATATGAAATGATTTCGTTCAAGCCAGGAACTTACGTCAAGAGACTTACACGCTTCTCTGGCACGCTTGAATGCCGCATAGGCAAACCGTGCTAA | 1323 | 48.07 | MAAFRTLFVCLLLFVVDANDQQQLVVNQADDKYWQNRAVEAKKVAQDAYNPNPEAVTENFNAAVGRELLGSNNTRRSLQKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDNDLLNPKLGTLRHAVIQKGPLWIIFGRSMVIQLTEELMISSNKTIDGRGANVHIAFGAGLTVQFVNNVIIHGIHVHDTISKPGGMIRDSVDHYGFRTVSDGDGISIFGGSHVWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDKVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTILSQGNRFFAPPNPNAKEITKRDYATESEWMNWSWKSEGDLMVNGAHFSTSGDQSKSNTKAFSRYEMISFKPGTYVKRLTRFSGTLECRIGKPC | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 77378083 | 77379645 | + | Hsped.03g20090.1 | Hepe03g2009 | 567007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g2009 | 440 | Pfam | Pectate lyase, N terminus | 31 | 78 | IPR007524 | GO:0030570(InterPro) | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 111 | 128 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 337 | 356 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 235 | 256 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 379 | 403 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 135 | 160 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 171 | 187 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Hepe03g2009 | 440 | PRINTS | Pollen allergen Amb family signature | 411 | 434 | IPR018082 | - | |
Hepe03g2009 | 440 | Pfam | Pectate lyase | 171 | 354 | IPR002022 | - | |
Hepe03g2009 | 440 | Gene3D | - | 88 | 433 | IPR012334 | - | |
Hepe03g2009 | 440 | SMART | amb_all | 163 | 360 | IPR002022 | - | |
Hepe03g2009 | 440 | SUPERFAMILY | Pectin lyase-like | 62 | 433 | IPR011050 | - | |
Hepe03g2009 | 440 | PANTHER | PECTATE LYASE 18-RELATED | 16 | 437 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g2009 | Hepe-Chr3:77378083 | Hepe08g1574 | Hepe-Chr8:22341687 | 2.21e-311 | dispersed | |
Hepe03g2009 | Hepe-Chr3:77378083 | Hepe02g1895 | Hepe-Chr2:30933475 | 1.33e-223 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g2009 | K01728 | - | csv:101217922 | 740.339 |