Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2009 ATGGCCGCTTTTAGAACCTTGTTTGTCTGTTTGTTGTTGTTTGTCGTTGATGCCAATGATCAACAACAACTTGTTGTCAATCAGGCTGATGATAAATATTGGCAGAATCGTGCCGTCGAAGCTAAGAAGGTTGCTCAAGATGCTTATAATCCCAACCCTGAAGCTGTTACCGAAAACTTCAACGCCGCTGTCGGCAGGGAGCTGCTGGGCAGCAACAATACGAGAAGAAGCTTGCAGAAATACAAAGGTCCATGCTTGGCCACGAACCCGATCGATCGATGCTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCTGAATGCCCATTGGGGTTCGGCCACAAGACGATTGGCGGAAAAAGGGGACCAATCTACGTAGTGACGGATGCCTCTGACAACGATCTGTTGAACCCGAAGCTAGGAACCCTACGCCATGCCGTCATCCAAAAAGGACCACTTTGGATCATCTTCGGGCGTAGCATGGTCATCCAACTCACCGAAGAGCTGATGATCTCAAGCAACAAGACCATTGACGGTCGCGGCGCAAACGTCCACATTGCCTTCGGCGCCGGCCTCACCGTTCAGTTTGTCAACAATGTCATCATCCATGGGATTCACGTCCATGATACCATCTCCAAACCTGGTGGGATGATTAGAGATTCTGTTGATCATTACGGGTTTAGAACTGTGAGTGATGGCGATGGCATCTCCATCTTTGGCGGTTCTCATGTTTGGATTGACCATGTTTCCATGTACAATTGCCAAGATGGCCTCATTGATGCCATCATGGGTTCCACGGCCATCACCATCTCCAACTCCCATTTCACTCACCACAACGAGGTGATGTTGTTCGGCGCGAGTGATAGTTATTCCGAAGACAAGGTTATGCAAATAACCCTTGCATTCAACCACTTTGGTAGGGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTAGTTAACAATGACTATACCCATTGGCTTATGTATGCCATTGGTGGTAGCCAACATCCCACCATCCTTAGCCAAGGCAACCGTTTCTTTGCACCTCCTAACCCTAATGCAAAAGAGATAACAAAGAGAGATTATGCAACGGAGAGCGAGTGGATGAACTGGTCATGGAAATCGGAGGGAGATTTGATGGTGAATGGAGCACACTTTTCTACATCGGGAGACCAAAGCAAAAGCAATACAAAAGCGTTCTCAAGATATGAAATGATTTCGTTCAAGCCAGGAACTTACGTCAAGAGACTTACACGCTTCTCTGGCACGCTTGAATGCCGCATAGGCAAACCGTGCTAA 1323 48.07 MAAFRTLFVCLLLFVVDANDQQQLVVNQADDKYWQNRAVEAKKVAQDAYNPNPEAVTENFNAAVGRELLGSNNTRRSLQKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDNDLLNPKLGTLRHAVIQKGPLWIIFGRSMVIQLTEELMISSNKTIDGRGANVHIAFGAGLTVQFVNNVIIHGIHVHDTISKPGGMIRDSVDHYGFRTVSDGDGISIFGGSHVWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSEDKVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTILSQGNRFFAPPNPNAKEITKRDYATESEWMNWSWKSEGDLMVNGAHFSTSGDQSKSNTKAFSRYEMISFKPGTYVKRLTRFSGTLECRIGKPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77378083 77379645 + Hsped.03g20090.1 Hepe03g2009 567007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2009 440 Pfam Pectate lyase, N terminus 31 78 IPR007524 GO:0030570(InterPro)
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Hepe03g2009 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Hepe03g2009 440 Pfam Pectate lyase 171 354 IPR002022 -
Hepe03g2009 440 Gene3D - 88 433 IPR012334 -
Hepe03g2009 440 SMART amb_all 163 360 IPR002022 -
Hepe03g2009 440 SUPERFAMILY Pectin lyase-like 62 433 IPR011050 -
Hepe03g2009 440 PANTHER PECTATE LYASE 18-RELATED 16 437 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2009 Hepe-Chr3:77378083 Hepe08g1574 Hepe-Chr8:22341687 2.21e-311 dispersed
Hepe03g2009 Hepe-Chr3:77378083 Hepe02g1895 Hepe-Chr2:30933475 1.33e-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2009 K01728 - csv:101217922 740.339