Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2035 ATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTGGCACAAGAGTCCACCCAGATTTCAACTGTTTAAACCCTCTCCTTCCAACTTTTTCTGATAATATTCACCACCCACCTCAAAAGCTCAAGAAGAAACGTAGCCTCCCTGGAAACCCAGACCCAGATGCAGAAGTGATAGCGCTTTCGCCGAAAACGCTTCTCGCGACGAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAACCTGCAGCTGCATAGGAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGCCCAGAGCCAACTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACAGGAATTAAAAAGCACTTCTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAGGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCTAGGCTTTCAGCTAACCAATTGGCCATGGCGGCGGCCGCCCCCGTCTCGGGCGCCACTGCCACTAACATAAACCCGTCCTCGGGCGCCACTGCCGCCCAATCTCTCTTTCCTTTTGGTACCCACCATTCGTTCCCAAACTTGTCACTACCGTCGCCACCGCCACCGCCGCTGCAAACCCACATGTCCCTAACCCCTTGGGATCATCCTCAAAACCCTAACCCTAATCACACCCTCCAAATCATCAAGCCAGAAGACTCAAATTCTCACCATTTCCACCAAATTCCAACTTTGCCCCTCTCAAATTCCACCTCCATCAACAACAGCCACCACCCTTTTGGTCTAATTCAAGATCACCACCACCAGAAGGTAGGCTCCTCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCGGTGCAACCGGCCTCACATGCTGCCACGTCAGCTCACTTATCCGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGAGTTGGGGCTGCAAAATCCGGTCACCATCAGCCCGAGTCAGTGGGCCACATGACTCACTTCAACATGCCCGGCATCCTCGAGTTCGCCGCACCGAGTCACATCGACTCACTGAGTCAACTCGGTCCAGACTACGCCACGTGGCAGAAGAGTGACCGGCTGACCCGGGACTTTCTCGGCCTGACCGGAGATGGGAACGGTGGCGGTGGTTCCGGCGGAGGAGTCGTGCAGGTTAGCATGAGCGTTAAGGACATGCTAACGTACGCAGGGGGATTGGAGATGTTCAAGCCACATAATAATAATAATAGTAATAATAATAACAATAATCATAATGGTTTTGGATATGCGGAGCCAGCTGCCAATCAAACTTGGGGGGACTGTTGA 1503 49.43 MSNSTSLSEEASVSSGTRVHPDFNCLNPLLPTFSDNIHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAPVSGATATNINPSSGATAAQSLFPFGTHHSFPNLSLPSPPPPPLQTHMSLTPWDHPQNPNPNHTLQIIKPEDSNSHHFHQIPTLPLSNSTSINNSHHPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVQPASHAATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMPGILEFAAPSHIDSLSQLGPDYATWQKSDRLTRDFLGLTGDGNGGGGSGGGVVQVSMSVKDMLTYAGGLEMFKPHNNNNSNNNNNNHNGFGYAEPAANQTWGDC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77745861 77748969 + Hsped.03g20350.1 Hepe03g2035 567033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2035 500 Gene3D Classic Zinc Finger 143 208 - -
Hepe03g2035 500 MobiDBLite consensus disorder prediction 36 58 - -
Hepe03g2035 500 MobiDBLite consensus disorder prediction 471 500 - -
Hepe03g2035 500 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Hepe03g2035 500 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 176 214 - -
Hepe03g2035 500 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Hepe03g2035 500 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Hepe03g2035 500 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 111 145 - -
Hepe03g2035 500 Gene3D Classic Zinc Finger 53 122 - -
Hepe03g2035 500 SMART c2h2final6 74 96 IPR013087 -
Hepe03g2035 500 SMART c2h2final6 150 170 IPR013087 -
Hepe03g2035 500 MobiDBLite consensus disorder prediction 471 489 - -
Hepe03g2035 500 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Hepe03g2035 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 439 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe03g2035 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Hepe03g2035 500 FunFam protein indeterminate-domain 12-like 53 121 - -
Hepe03g2035 500 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 149 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0263 Hepe-Chr2:2594541 Hepe03g2035 Hepe-Chr3:77745861 3.59e-103 dispersed
Hepe03g1919 Hepe-Chr3:76272446 Hepe03g2035 Hepe-Chr3:77745861 1.83e-98 dispersed
Hepe03g2035 Hepe-Chr3:77745861 Hepe04g1495 Hepe-Chr4:70566490 1.84e-106 dispersed
Hepe03g2035 Hepe-Chr3:77745861 Hepe08g0425 Hepe-Chr8:3743018 4.22e-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55331 PF00096 zf-C2H2 0.005 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2035 K25870 - csv:101208253 746.503