Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2043 ATGGCGAACAATCATTCCGACACTCCAGCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGGTCGGCGGAGCAAGGGTTAGCTGGAACTGACGGCGGCTTGGCCGGAGCTGCGTCGGCTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGAGCTGGCCACATGGCTACGATTGGAAGTGGGAGTGTCGGTGGAGCAGGGTTCCATGGCGGACCCCCTTTTCCGTTGGGGTTGAGCTTGGACCAAGGGAAGGGCGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGGAAGCGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCGTCTATGAAAAATATGTTTCAAGGCCAACAAATGCATGCTACTATGGGTGTAGCCCCACATCCACCAACAATGCGCCCTAGGGTACGGGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCCGAGCGGTTACGGCGAGAAAGGATAGCAGAGAGAATTAGGGCTTTGCAAGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCGATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGACATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGCGGTAGGAATCAACCCGCATGGGATAAGTGGTCAAATGACGGTACGGAGAGACAAGTTGCTAAGCTTATGGAAGAAAACGTGGGAGCTGCAATGCAATTCCTTCAATCAAAGGCGCTCTGCATCATGCCCATCTCGTTGGCTTCGGCGATTTATCACACGCAACCGCCCGATAGCTCGAGTGTTGTGAAGCCAGAGAGCATCCCTCCTCCATAG 918 52.83 MANNHSDTPADDFLEQILGISPFGSAEQGLAGTDGGLAGAASAQAPMMLQLSSGDGAGHMATIGSGSVGGAGFHGGPPFPLGLSLDQGKGGFLKAEEASGSGKRYCGEVVDVRASSMKNMFQGQQMHATMGVAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESIPPP 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 77926067 77929402 + Hsped.03g20430.1 Hepe03g2043 567041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2043 305 Gene3D - 144 206 IPR036638 GO:0046983(InterPro)
Hepe03g2043 305 Pfam Helix-loop-helix DNA-binding domain 154 199 IPR011598 GO:0046983(InterPro)
Hepe03g2043 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 208 IPR036638 GO:0046983(InterPro)
Hepe03g2043 305 FunFam Basic helix-loop-helix transcription factor 144 206 - -
Hepe03g2043 305 SMART finulus 155 204 IPR011598 GO:0046983(InterPro)
Hepe03g2043 305 MobiDBLite consensus disorder prediction 130 153 - -
Hepe03g2043 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983(InterPro)
Hepe03g2043 305 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 284 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2043 Hepe-Chr3:77926067 Hepe09g0590 Hepe-Chr9:5547958 6.53e-56 dispersed
Hepe03g2043 Hepe-Chr3:77926067 Hepe09g1511 Hepe-Chr9:38643167 1.71e-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55333 PF00010 HLH 1.10E-07 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2043 - - - 0.0