Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2055 ATGGAAGAGGTTGAAGAAGCTAATAGACTAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTGTTGACTATGGCGTCTCCGTCTCCGTCGCCTCAAGATCAGTCGAAGCTCAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAACAAGGTTAAGAAGAGCTTTCTGTTTAGTAATTCCCCTTTTCCTCCTCCTCTTCCCCAATCCTTGTTTTTAGAAAGTTCTTCCATTAATTGCAGATTGGACCTTCTCCACGGGAGGAATTTGCAGATGGGTCCTCTTTCTTTGGGGAACCCATCTTTGGAATTGAGCTCAAATGCCAAATCTGCTGCTCATTTTCATCATCATTTCCTTCAGAACAGGGTGTTGTTGAACAATATTCCTAATCCAAAACAGCCTGAAATGGTGTATCTTAGGAGCAATAGTGGGATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTTATTTCTTCCTTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGACTGGGAGTGCCTTTCATTTGATCGGGGCGCCCCGGTCGTCCGATCAGAATTCGAACCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGTAGTGGGAGATGTCACTGCTCTAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCCGCGATTAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCGAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGGAAGCACGTCGAGAGGTGTCTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATACCTTCTCAATCTGCAAATACTTGA 1017 44.74 MEEVEEANRLAVESCHKVLNLLTMASPSPSPQDQSKLRSCLMAETGEAVFKFRKVLCLLDSSGLGHARVRKNKVKKSFLFSNSPFPPPLPQSLFLESSSINCRLDLLHGRNLQMGPLSLGNPSLELSSNAKSAAHFHHHFLQNRVLLNNIPNPKQPEMVYLRSNSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGTGSAFHLIGAPRSSDQNSNHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQSANT 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78089943 78092262 - Hsped.03g20550.1 Hepe03g2055 567053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2055 338 Gene3D WRKY domain 256 331 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2055 338 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2055 338 SMART WRKY_cls 270 330 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2055 338 FunFam WRKY transcription factor 65 254 331 - -
Hepe03g2055 338 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2055 338 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 334 IPR044810 GO:0003700(InterPro)
Hepe03g2055 338 MobiDBLite consensus disorder prediction 211 237 - -
Hepe03g2055 338 Pfam Plant zinc cluster domain 223 268 IPR018872 -
Hepe03g2055 338 SUPERFAMILY WRKY DNA-binding domain 268 330 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2055 Hepe-Chr3:78089943 Hepe04g1263 Hepe-Chr4:68169831 3.97e-55 dispersed
Hepe03g2055 Hepe-Chr3:78089943 Hepe06g1960 Hepe-Chr6:70850247 1.91e-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55336 PF03106 WRKY 3.30E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2055 - - - 0.0