Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g2067 | ATGTCACTTGATCATGATCTCTTGTTTGGTTACCAAGAAAATTTCTCATTTGACTTCAATTACTTGGAAGAGATGCTGCTTGTTGATATGCTTGATACGACGTCGGTCGGAGGGACGTCTTCGGAAGATTCGAGCTCTTGTTCGTCTCCGGTGTTGCAAGTTAAGGAGGAGATAGAAGAAGGGAGTTTGAGCGAGATCGTCGTACAGGAAGATGAACAACAGAAGGAAGAAATGGTGGTGTATAGAGGAGTGCGGAGGAGGCCGTGGGGAAAGTATGCGGCCGAGATAAGAGACTCGACGCGACAAGGAGTGAGGGTGTGGTTGGGGACGTTTGAGAGTGCGGAGGAGGCAGCGTTGGCTTATGACCAAGCTGCATTTTGCATGAGAGGGGAACTAGCCACGCTCAATTTTCCAGTGGAGATTGTCCGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCCGGGAGCTCGCCGGTCTTGGCACTCAAGCGGCGCCATTCGATACAGAGGAAGAAGATGGCGGAGATGGAGAAGAGGGAGAAGAAGATGAAGAAGAAGAAAACTGTAGTTGTTTTTGAGGATTTGGGTGTTGAATACTTGGAACAACTTTTAAGTTTGACTTCTTAA | 630 | 48.73 | MSLDHDLLFGYQENFSFDFNYLEEMLLVDMLDTTSVGGTSSEDSSSCSSPVLQVKEEIEEGSLSEIVVQEDEQQKEEMVVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEEAALAYDQAAFCMRGELATLNFPVEIVRESLREMKYRWEAGSSPVLALKRRHSIQRKKMAEMEKREKKMKKKKTVVVFEDLGVEYLEQLLSLTS | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 78552950 | 78553886 | + | Hsped.03g20670.1 | Hepe03g2067 | 567065 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g2067 | 209 | CDD | AP2 | 81 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | SUPERFAMILY | DNA-binding domain | 80 | 140 | IPR016177 | GO:0003677(InterPro) | |
Hepe03g2067 | 209 | Gene3D | AP2/ERF domain | 80 | 140 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | PANTHER | DNA-BINDING DOMAIN | 51 | 182 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Hepe03g2067 | 209 | SMART | rav1_2 | 80 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | FunFam | Ethylene-responsive transcription factor 2 | 79 | 140 | - | - | |
Hepe03g2067 | 209 | Pfam | AP2 domain | 80 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | ProSiteProfiles | AP2/ERF domain profile. | 80 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | PRINTS | Ethylene responsive element binding protein signature | 81 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g2067 | 209 | PRINTS | Ethylene responsive element binding protein signature | 104 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g2067 | Hepe-Chr3:78552950 | Hepe06g1929 | Hepe-Chr6:70505610 | 4.50e-46 | dispersed | |
Hepe03g2066 | Hepe-Chr3:78533668 | Hepe03g2067 | Hepe-Chr3:78552950 | 3.00e-26 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55339 | PF00847 | AP2 | 1.00E-15 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g2067 | K14516 | - | csv:101205053 | 263.462 |