Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2067 ATGTCACTTGATCATGATCTCTTGTTTGGTTACCAAGAAAATTTCTCATTTGACTTCAATTACTTGGAAGAGATGCTGCTTGTTGATATGCTTGATACGACGTCGGTCGGAGGGACGTCTTCGGAAGATTCGAGCTCTTGTTCGTCTCCGGTGTTGCAAGTTAAGGAGGAGATAGAAGAAGGGAGTTTGAGCGAGATCGTCGTACAGGAAGATGAACAACAGAAGGAAGAAATGGTGGTGTATAGAGGAGTGCGGAGGAGGCCGTGGGGAAAGTATGCGGCCGAGATAAGAGACTCGACGCGACAAGGAGTGAGGGTGTGGTTGGGGACGTTTGAGAGTGCGGAGGAGGCAGCGTTGGCTTATGACCAAGCTGCATTTTGCATGAGAGGGGAACTAGCCACGCTCAATTTTCCAGTGGAGATTGTCCGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCCGGGAGCTCGCCGGTCTTGGCACTCAAGCGGCGCCATTCGATACAGAGGAAGAAGATGGCGGAGATGGAGAAGAGGGAGAAGAAGATGAAGAAGAAGAAAACTGTAGTTGTTTTTGAGGATTTGGGTGTTGAATACTTGGAACAACTTTTAAGTTTGACTTCTTAA 630 48.73 MSLDHDLLFGYQENFSFDFNYLEEMLLVDMLDTTSVGGTSSEDSSSCSSPVLQVKEEIEEGSLSEIVVQEDEQQKEEMVVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEEAALAYDQAAFCMRGELATLNFPVEIVRESLREMKYRWEAGSSPVLALKRRHSIQRKKMAEMEKREKKMKKKKTVVVFEDLGVEYLEQLLSLTS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78552950 78553886 + Hsped.03g20670.1 Hepe03g2067 567065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2067 209 CDD AP2 81 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 SUPERFAMILY DNA-binding domain 80 140 IPR016177 GO:0003677(InterPro)
Hepe03g2067 209 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 PANTHER DNA-BINDING DOMAIN 51 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Hepe03g2067 209 SMART rav1_2 80 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 FunFam Ethylene-responsive transcription factor 2 79 140 - -
Hepe03g2067 209 Pfam AP2 domain 80 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g2067 209 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2067 Hepe-Chr3:78552950 Hepe06g1929 Hepe-Chr6:70505610 4.50e-46 dispersed
Hepe03g2066 Hepe-Chr3:78533668 Hepe03g2067 Hepe-Chr3:78552950 3.00e-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55339 PF00847 AP2 1.00E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2067 K14516 - csv:101205053 263.462