Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2103 ATGGCAGCCTCTTCTTCTTCTCCTTCTCCTTGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGCGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCGGACTCCCACCGCTGTGAAGCGGCAGTGACCATCTCGTACGAAGCTCAAGCGAGGCTTCAAGATCCGATCTACGGTTGCGTCTCGCACATTTTCACTCTCCAACAACAGGTTATGAATCTAAGAGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAGCTACACGACAAGAAACCCTAGTGAATTTCTGTACGAAAAATCTCCATTTTATTCCGATGACGACCCATTACAAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCACCACCGCACCGGAGTTTGAACCTGCGCCGTTTCCGTACGTTGAGATGAGCGTCGCCGATTCAAATCTCGCCGGAGACTTCTGCTGCTAA 552 50.36 MAASSSSPSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPDSHRCEAAVTISYEAQARLQDPIYGCVSHIFTLQQQVMNLRAQVAYLREQAAQILLNSYTTRNPSEFLYEKSPFYSDDDPLQDLQSWLLAESCSTTAPEFEPAPFPYVEMSVADSNLAGDFCC 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79041611 79042381 - Hsped.03g21030.1 Hepe03g2103 567101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2103 183 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 125 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Hepe03g2103 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Hepe03g2103 183 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2103 Hepe-Chr3:79041611 Hepe06g1935 Hepe-Chr6:70569932 7.55e-64 dispersed
Hepe03g2103 Hepe-Chr3:79041611 Hepe05g1877 Hepe-Chr5:69076213 2.41e-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55343 PF03195 LOB 9.70E-35 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2103 K13945 - csv:101220863 328.561