Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g2127 | ATGGACGGTATTCATGCCAGCGATGGACGGATGCATATGAGCCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAGCAGGAACATCATGACTTGCATTATATGAATAATGGGAATGGAATGGCTGATGAGCATGAAAATGAAGCTCACGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGAGATATTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGGGAAAACTGCGATCAGCTCACTCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCTCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACAAAATGATAGGCACCTCACTGATGAAGCATTTAACCAGGCCCTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCACGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGTTGGAGTACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTTGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAAGCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACATGCTTCTTCTACCTTTAATAGAAATGAGAATGTTGTGCAGAATGCAGATTCCGAGTCCAACCCAAAAAGTGCTTAG | 915 | 44.7 | MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMNNGNGMADEHENEAHGIMVVEREAPSDHGDIAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCCISEKSTPMMRRGPDGPRSLCNACGLMWANKGTLRDLSKAPNQGGHASSTFNRNENVVQNADSESNPKSA | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 79395969 | 79400191 | + | Hsped.03g21270.1 | Hepe03g2127 | 567125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g2127 | 304 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Hepe03g2127 | 304 | MobiDBLite | consensus disorder prediction | 271 | 304 | - | - | |
Hepe03g2127 | 304 | ProSiteProfiles | GATA-type zinc finger domain profile. | 240 | 287 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe03g2127 | 304 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 28 | 294 | IPR045280 | GO:0006355(InterPro) | |
Hepe03g2127 | 304 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Hepe03g2127 | 304 | MobiDBLite | consensus disorder prediction | 276 | 304 | - | - | |
Hepe03g2127 | 304 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Hepe03g2127 | 304 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 280 | - | - | |
Hepe03g2127 | 304 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Hepe03g2127 | 304 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Hepe03g2127 | 304 | Pfam | GATA zinc finger | 231 | 267 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe03g2127 | 304 | CDD | ZnF_GATA | 231 | 273 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe03g2127 | 304 | SMART | GATA_3 | 225 | 278 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe03g2127 | 304 | Gene3D | - | 221 | 289 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Hepe03g2127 | 304 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Hepe03g2127 | 304 | MobiDBLite | consensus disorder prediction | 190 | 223 | - | - | |
Hepe03g2127 | 304 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Hepe03g2127 | 304 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g2127 | Hepe-Chr3:79395969 | Hepe10g0439 | Hepe-Chr10:4953485 | 2.20e-64 | dispersed | |
Hepe03g2127 | Hepe-Chr3:79395969 | Hepe07g2493 | Hepe-Chr7:69298466 | 5.73e-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55346 | PF06203 | CCT | 8.70E-15 | CL0281 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g2127 | - | - | - | 0.0 |