Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2127 ATGGACGGTATTCATGCCAGCGATGGACGGATGCATATGAGCCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAGCAGGAACATCATGACTTGCATTATATGAATAATGGGAATGGAATGGCTGATGAGCATGAAAATGAAGCTCACGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGAGATATTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGGGAAAACTGCGATCAGCTCACTCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCTCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACAAAATGATAGGCACCTCACTGATGAAGCATTTAACCAGGCCCTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCACGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGTTGGAGTACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTTGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAAGCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACATGCTTCTTCTACCTTTAATAGAAATGAGAATGTTGTGCAGAATGCAGATTCCGAGTCCAACCCAAAAAGTGCTTAG 915 44.7 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMNNGNGMADEHENEAHGIMVVEREAPSDHGDIAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCCISEKSTPMMRRGPDGPRSLCNACGLMWANKGTLRDLSKAPNQGGHASSTFNRNENVVQNADSESNPKSA 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79395969 79400191 + Hsped.03g21270.1 Hepe03g2127 567125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2127 304 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 271 304 - -
Hepe03g2127 304 ProSiteProfiles GATA-type zinc finger domain profile. 240 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 PANTHER GATA TRANSCRIPTION FACTOR 28 28 294 IPR045280 GO:0006355(InterPro)
Hepe03g2127 304 MobiDBLite consensus disorder prediction 1 29 - -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 276 304 - -
Hepe03g2127 304 Pfam tify domain 84 112 IPR010399 -
Hepe03g2127 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 280 - -
Hepe03g2127 304 SMART tify_2 78 113 IPR010399 -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 1 15 - -
Hepe03g2127 304 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 Gene3D - 221 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe03g2127 304 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Hepe03g2127 304 MobiDBLite consensus disorder prediction 190 223 - -
Hepe03g2127 304 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Hepe03g2127 304 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2127 Hepe-Chr3:79395969 Hepe10g0439 Hepe-Chr10:4953485 2.20e-64 dispersed
Hepe03g2127 Hepe-Chr3:79395969 Hepe07g2493 Hepe-Chr7:69298466 5.73e-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55346 PF06203 CCT 8.70E-15 CL0281 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2127 - - - 0.0