Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2127 ATGGACGGTATTCATGCCAGCGATGGACGGATGCATATGAGCCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAGCAGGAACATCATGACTTGCATTATATGAATAATGGGAATGGAATGGCTGATGAGCATGAAAATGAAGCTCACGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGAGATATTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGGGAAAACTGCGATCAGCTCACTCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCTCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACAAAATGATAGGCACCTCACTGATGAAGCATTTAACCAGGCCCTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCACGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGAGAGTTGGAGTACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTTGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAAGCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACATGCTTCTTCTACCTTTAATAGAAATGAGAATGTTGTGCAGAATGCAGATTCCGAGTCCAACCCAAAAAGTGCTTAG 915 44.7 MDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMNNGNGMADEHENEAHGIMVVEREAPSDHGDIAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCCISEKSTPMMRRGPDGPRSLCNACGLMWANKGTLRDLSKAPNQGGHASSTFNRNENVVQNADSESNPKSA 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 79395969 79400191 + Hsped.03g21270.1 Hepe03g2127 567125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2127 304 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 271 304 - -
Hepe03g2127 304 ProSiteProfiles GATA-type zinc finger domain profile. 240 287 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 PANTHER GATA TRANSCRIPTION FACTOR 28 28 294 IPR045280 GO:0006355(InterPro)
Hepe03g2127 304 MobiDBLite consensus disorder prediction 1 29 - -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 276 304 - -
Hepe03g2127 304 Pfam tify domain 84 112 IPR010399 -
Hepe03g2127 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 280 - -
Hepe03g2127 304 SMART tify_2 78 113 IPR010399 -
Hepe03g2127 304 MobiDBLite consensus disorder prediction 1 15 - -
Hepe03g2127 304 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 CDD ZnF_GATA 231 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g2127 304 Gene3D - 221 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe03g2127 304 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Hepe03g2127 304 MobiDBLite consensus disorder prediction 190 223 - -
Hepe03g2127 304 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Hepe03g2127 304 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2127 Hepe-Chr3:79395969 Hepe10g0439 Hepe-Chr10:4953485 2.20e-64 dispersed
Hepe03g2127 Hepe-Chr3:79395969 Hepe07g2493 Hepe-Chr7:69298466 5.73e-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe03g0226 . 1 180 Tify Gene Family AT4G14713 52.1 4.1e-46 181.8
Hepe03g0226 . 1 285 Tify Gene Family AT4G14720 52.0 2.1e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55346 PF06203 CCT 8.70E-15 CL0281 Hepe TF