Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g2130 ATGCCGTCCGTCTATGGAGCTCGTTTGACCACCTTCGAAGATTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCCGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCTCTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGAGGTGTCTCTGTCCCGGCACTTGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTAGTGACAGGTGGAGACTTGTATGCTACTGTCTTCGAGAATAGTCTAATGGAGCACCATATCGCACTTCCTCCTGATTCTATGGGAAAAATTTCCTATATTGCACCACCTGGTCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAGTTTACCATGCTTCAGAATTGGCCTGTGCGTACACCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCCGTTCTTGGAGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACTGTTATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAACGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCCAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACCGGAATTACTTTGGCGGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCGACATCTCGATGGGCAGAAGCTCTACGTGAAATATCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCGTATCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTCGGTGGGCCAGAACGAACTGGTAGTGTTACCATTGTCGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCTGATCCAGTGACATCTGCCACCCTTAGTATCGTTCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTTCCTTCCGTTAACTGGCTAATTTCATACTCAAAATACTCTACTGCGTTGGAATCTTTCTACGAGAAGTTCGATCCAGATTTTATTAGCATCAGGACAAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGGAAGGATGCGTTGGCCGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGAGAGGACTATCTTGCTCAGAATGCATTTACTCCTTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTTTAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATATCATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAAAAGTTCGAGGATCCAGCTGAAGGAGAAACAGCTCTTACTGAGAAATTCCAGAAACTACATGATGATCTGACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGGTAG 1872 44.76 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDILWDFQPKKLGEGDLVTGGDLYATVFENSLMEHHIALPPDSMGKISYIAPPGQYSLKDTVLELEFQGVKKQFTMLQNWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFFNLANQAVERGAGMDGQKISYSLIKHRLGDLFYRLVSQKFEDPAEGETALTEKFQKLHDDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 79415226 79420254 - Hsped.03g21300.1 Hepe03g2130 567128

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g2130 623 Gene3D - 20 89 IPR023366 -
Hepe03g2130 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Hepe03g2130 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Hepe03g2130 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Hepe03g2130 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Hepe03g2130 623 Gene3D - 459 612 IPR024034 -
Hepe03g2130 623 Gene3D - 134 205 - -
Hepe03g2130 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Hepe03g2130 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Hepe03g2130 623 Gene3D - 91 457 IPR027417 -
Hepe03g2130 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Hepe03g2130 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Hepe03g2130 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Hepe03g2130 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Hepe03g2130 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Hepe03g2130 623 CDD V_A-ATPase_A 88 460 - -
Hepe03g2130 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Hepe03g2130 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Hepe03g2130 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Hepe03g2130 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Hepe03g2130 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Hepe03g2130 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g2130 K02145 - - csv:101216234 1208.36
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe03g2130 . 1 623 Primary Pumps ATPases(2) AT1G78900 92.9 0.0e+00 1168.3
Hepe02g0408 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 2.1e-268 921.4
Hepe02g0408 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.7 5.5e-269 923.3
Hepe02g0408 . 9 489 Primary Pumps ATPases(2) AT1G20260 95.8 2.3e-267 917.9
Hepe02g2443 . 1 376 Primary Pumps ATPases(2) AT1G12840 80.3 9.3e-176 613.2
Hepe02g0058 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 2.6e-116 415.2
Hepe10g1401 . 1 261 Primary Pumps ATPases(2) AT3G58730 80.8 5.8e-116 414.1
Hepe02g1671 . 1 229 Primary Pumps ATPases(2) AT4G11150 79.6 3.0e-92 335.1
Hepe02g1671 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 2.0e-75 279.3
Hepe02g1671 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 1.1e-66 250.0
Hepe09g1807 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe10g1189 . 1 126 Primary Pumps ATPases(2) AT4G02620 82.5 1.5e-56 215.7
Hepe08g1504 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 2.4e-207 718.4
Hepe04g1087 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.6e-206 715.7
Hepe08g0853 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1332.8
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G28520 62.7 9.5e-266 913.3
Hepe02g0483 . 4 535 Primary Pumps ATPases(2) AT2G28520 67.7 4.2e-213 738.4
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT2G21410 72.6 1.5e-311 1065.4
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.0 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT2G21410 79.5 5.6e-250 860.9
Hepe10g0122 . 1 720 Primary Pumps ATPases(2) AT4G39080 73.2 6.3e-310 1060.1
Hepe08g0853 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.0e-296 1016.1
Hepe02g0483 . 4 540 Primary Pumps ATPases(2) AT4G39080 80.3 1.1e-250 863.2
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 6.4e-61 230.3
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G34720 95.7 1.4e-60 229.2
Hepe10g0130 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 7.3e-53 203.4
Hepe01g2283 . 1 122 Primary Pumps ATPases(2) AT1G19910 95.1 9.5e-53 203.0
Hepe10g0129 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Hepe10g0129 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.8e-60 228.8
Hepe01g2283 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0130 . 28 165 Primary Pumps ATPases(2) AT4G38920 95.7 4.1e-60 227.6
Hepe10g0129 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 6.5e-67 250.8
Hepe01g2283 . 1 165 Primary Pumps ATPases(2) AT1G75630 78.5 1.4e-66 249.6
Hepe10g0130 . 2 165 Primary Pumps ATPases(2) AT1G75630 78.3 1.4e-66 249.6
Hepe10g0129 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 2.0e-74 275.4
Hepe10g0130 . 3 165 Primary Pumps ATPases(2) AT2G16510 96.3 4.5e-74 274.2
Hepe01g2283 . 3 165 Primary Pumps ATPases(2) AT2G16510 95.7 1.3e-73 272.7
Hepe10g0281 . 1 180 Primary Pumps ATPases(2) AT4G32530 75.7 8.0e-76 280.4
Hepe10g0281 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 1.3e-71 266.5
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 1.2e-198 689.1
Hepe07g1541 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 1.4e-191 665.6
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07810 80.0 0.0e+00 1344.7
Hepe10g1192 . 22 872 Primary Pumps ATPases(2) AT4G00900 66.1 0.0e+00 1082.8
Hepe08g1343 . 1 1001 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1628.2
Hepe10g1192 . 1 872 Primary Pumps ATPases(2) AT1G07670 79.6 0.0e+00 1343.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37