Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0050 ATGTCGATGTCAATTTCAATGTTAATGAGTTTAGTTAGTATTATATTGTGTGTCGGGTTCAGTTTGACATTGAATTTGAGAGGTGTAAATGGGTTGAGTATGGGATATTACTTAATGAGTTGTCCGTTTGTGGATCCGATTGTGAAGAATACGGTAAACCGAGCTCTTCAGAATGATCCCACTCTAGCTGCTGCCCTCATTCGAATGCATTTTCACGACTGTTTTGTTGAGGGCTGTGATGGGTCGGTACTAATTGATTCAACACGAGACAATACTGCTGAAAAAGATTCTCTTGCCAACTTCAGCTTACGAGGTTACGAGCTTATTGATGATATTAAGGAACAACTAGAGAACCAATGTCCTGGTGTTGTTTCTTGTGCCGACATTATCGCTATGGTTGCTCGAGATGCGGTCTTTTGGGCAGGGGGTCCGTTTTACGACATACCGAAGGGAAGGAAGGACGGAACGAGGTCTAGAATCGAAGACACCTTCAATTTGCCTTCGCCTTTCTTCAATGCATCTCAGCTTATTAATACCTTCGCCCAACGTGGCTTTACTGCTCAACAAATGGTCGCACTTTCTGGGGCTCATACGTTGGGAGTGGCAAGATGCGTCTCCTTCAAAGGCAGACTGAGCGGCAACGATCCCCTTCTAAGTCCCAACTTCGGGAGAACACTGTCAAGAACATGCAGCAACGGCGACAATGCAATACAAACATTCGACGCCACAGCCGACAGCTTCGACAACGTCTATTACAACGCGCTGTCGAGAGGTGCCGGAGTTCTGTTTTCCGACCAGACCTTATTCGCCAGCCCACGTACGAGGGGCATTGTTACTGCCTACGCCATGAACGAAGCGCTGTTCTTCCTAGACTTTCAACAGGCCATCATCAAAATGGGCTTGCTCGATGTTAAGGAAGGTTACAGAGGCCAAGTCCGCCGCAACTGCCGTAGGGTTAATTGA 963 46.94 MSMSISMLMSLVSIILCVGFSLTLNLRGVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAAALIRMHFHDCFVEGCDGSVLIDSTRDNTAEKDSLANFSLRGYELIDDIKEQLENQCPGVVSCADIIAMVARDAVFWAGGPFYDIPKGRKDGTRSRIEDTFNLPSPFFNASQLINTFAQRGFTAQQMVALSGAHTLGVARCVSFKGRLSGNDPLLSPNFGRTLSRTCSNGDNAIQTFDATADSFDNVYYNALSRGAGVLFSDQTLFASPRTRGIVTAYAMNEALFFLDFQQAIIKMGLLDVKEGYRGQVRRNCRRVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21583532 21591222 - Hsped.04g00500.1 Hepe04g0050 567188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0050 320 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Hepe04g0050 320 SUPERFAMILY Heme-dependent peroxidases 31 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PANTHER PEROXIDASE 25-RELATED 18 316 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Hepe04g0050 320 FunFam Peroxidase 35 169 - -
Hepe04g0050 320 Pfam Peroxidase 48 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 CDD secretory_peroxidase 31 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Hepe04g0050 320 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 Gene3D - 35 320 - -
Hepe04g0050 320 ProSiteProfiles Plant heme peroxidase family profile. 31 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 Gene3D Peroxidase, domain 2 167 299 - -
Hepe04g0050 320 FunFam Peroxidase 167 299 - -
Hepe04g0050 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe04g0050 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0050 Hepe-Chr4:21583532 Hepe07g0201 Hepe-Chr7:1774637 5.17e-88 dispersed
Hepe01g0321 Hepe-Chr1:47579624 Hepe04g0050 Hepe-Chr4:21583532 2.75e-20 wgd
Hepe10g1144 Hepe-Chr10:45352442 Hepe04g0050 Hepe-Chr4:21583532 2.57e-08 wgd
Hepe02g2244 Hepe-Chr2:63839535 Hepe04g0050 Hepe-Chr4:21583532 8.83e-10 wgd
Hepe02g1893 Hepe-Chr2:30550559 Hepe04g0050 Hepe-Chr4:21583532 2.90e-66 wgd
Hepe04g0050 Hepe-Chr4:21583532 HepeContig65g0027 Hepe-ChrContig65:3130350 2.05e-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0050 K00430 - csv:101202852 571.622