Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe04g0054 | ATGATCGGGATGGAAGCTGCAGGTGTTCATGAAACCACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATTGCGGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGGAAATACAGTGTCTGGATTGGTGGTTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGTTTGCAAAGGCTGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAGTGCTTCTAA | 333 | 47.75 | MIGMEAAGVHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWFAKAEYDESGPSIVHRKCF | 110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21657288 | 21657713 | - | Hsped.04g00540.1 | Hepe04g0054 | 567192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe04g0054 | 110 | SUPERFAMILY | Actin-like ATPase domain | 2 | 110 | IPR043129 | - | |
| Hepe04g0054 | 110 | Gene3D | - | 72 | 108 | - | - | |
| Hepe04g0054 | 110 | FunFam | Putative actin-related protein 5 | 74 | 102 | - | - | |
| Hepe04g0054 | 110 | FunFam | Major actin | 2 | 73 | - | - | |
| Hepe04g0054 | 110 | PANTHER | ACTIN | 1 | 102 | IPR004000 | GO:0005737(PANTHER) | |
| Hepe04g0054 | 110 | Gene3D | - | 1 | 71 | - | - | |
| Hepe04g0054 | 110 | Pfam | Actin | 5 | 110 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g0302 | Hepe-Chr1:45277193 | Hepe04g0054 | Hepe-Chr4:21657288 | 1.78e-72 | dispersed | |
| Hepe04g0054 | Hepe-Chr4:21657288 | Hepe04g0855 | Hepe-Chr4:62818130 | 9.12e-73 | dispersed | |
| Hepe04g0054 | Hepe-Chr4:21657288 | Hepe06g0319 | Hepe-Chr6:11316899 | 1.52e-71 | wgd | |
| Hepe04g0054 | Hepe-Chr4:21657288 | HepeContig65g0002 | Hepe-ChrContig65:18492 | 7.18e-65 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe04g0054 | K10355 | - | rcu:8267766 | 218.394 |