Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0085 ATGTGCTCCACGATTGATAAGATGGGTAATGAAAATTTGCTGCAGAGAGTAGATGACAATGCTGAAGCAAATGGTTGTTCAACTTCTCAGTCTCGCCATAGTGTTGGCAAGGAATATGGGGCGAGTTGTCGTGTGTGTCAATGTACTGAATCTGACAGAAGGGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCGATAATGGAAGCAAGAAAAAGTGATGGGGATTCTAAGACTGAGAAGCAAAGTGTAGAAAATGTTGATAGTTGTTCTGTGCTGAAAAAAAATGTTAAAAGGGATTCTGGTTCTATTGAGTTCATTGGTCCTAATGGGGAGGTTTTCGTTTGCAAGACTGATATTGAGATGGGTTCATGTCATCATGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTGGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTACTGGGGAACCTAATCGTATGCAGACTTATACTAGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATCTCGCTGTGGTTTAGTCCCCATAACTATAGTAGCAACAATAACTCTACTGCAGCCTCACAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGACTGCTTACTGTGACGCTTGCTTGCTTAATAGCTCCTCGTGTGGGGAAGAAAACTGCGAGAAGTGGCCTTCATATTCTTCTTGGAGGCGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGTTTTTTTGTGCTTACCAGGATAAAATACGGACCTGCACGATACTGGGCTATTTTGTTCGTCTTTTGGTTCCTGGTATTTGGCATTTGGGCATCGAGGACACATGGTGCTCATACGACGTAA 1086 43.37 MCSTIDKMGNENLLQRVDDNAEANGCSTSQSRHSVGKEYGASCRVCQCTESDRRGDAVLGFLGITPPIMEARKSDGDSKTEKQSVENVDSCSVLKKNVKRDSGSIEFIGPNGEVFVCKTDIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTATGEPNRMQTYTSTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTARSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28273600 28317064 + Hsped.04g00850.1 Hepe04g0085 567223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0085 361 SMART ringv_2 126 167 IPR011016 GO:0008270(InterPro)
Hepe04g0085 361 SUPERFAMILY RING/U-box 130 168 - -
Hepe04g0085 361 ProSiteProfiles Zinc finger RING-CH-type profile. 109 173 IPR011016 GO:0008270(InterPro)
Hepe04g0085 361 PANTHER ZINC FINGER, RING-CH-TYPE 35 350 - -
Hepe04g0085 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Hepe04g0085 361 Pfam RING-variant domain 129 166 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0085 Hepe-Chr4:28273600 Hepe05g0126 Hepe-Chr5:1475258 1.07e-08 dispersed
Hepe04g0085 Hepe-Chr4:28273600 Hepe02g3339 Hepe-Chr2:82988698 1.22e-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0085 - - - 0.0