Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0239 ATGATGGATTATATTCTTCGTCGGAATCTGATCGGAGATCGCGATTTGCTGCAGCCTTTATTAATGTGGTCAAAGTCCGATAATAAACCCGACGGATCTGAGATGTTTAGCAACTCATCGAAAGGGGAAAACGATTCCTACGGAGGAATCGTGAAAAACCATCCCGATTCTCTGAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCGGGGAATCAGACGGTGGCGACGATGAATTCTGAGGCGGCAACGAACAACAAAAACAGTTTCACTCCGGCGAAGAGCGGCGGCGATAACTTCCGGTGCGACAGCATGGAGACGACGTGTCGCAGCGAGACGACGCCGGGAGTGGTGATAAAGCCGCACACAGGCGGCGATGTGCGATGGGATGCGATAAACATGGTGTCGAAAGGGGGGCAGTTGAATCTGAGCCATTTCCGGCTGCTGAAGCGGCTGGGTTACGGCGATATTGGAAGTGTTTATTTGGTGGAATTGAGAGGAACTGATACGTTCTTCGCCATGAAAGTGATGGATAAAGCTTCGTTGGCGAGTAGGAATAAGCTTCTGAGAGCGCAAACGGAGAGGGAGATTTTAGGGCTTTTGGATCATCCGTTTTTGCCTACTCTCTATTCTTATTTCGAAACTGATAAGTTTTATTGTTTGGTTATGGAGTTTTGTAGCGGTGGTAATCTTCATTCTCTTCGCCAAAAGCAACCTAACAAGTACTTTACTGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCACTGGAATACCTTCACATGTTAGGGATCGTGTACAGAGATTTGAAACCAGAGAACTTGTTAATCCGAGACGAAGGTCATATTATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGTCAACACCAACGGCAACTCCAACACCGGCAACGGTGGCTCCAACGGCGGCAGCGGGGGCATCCTCGACGACGAGTTCGCCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCGCTCTGCCCGAACTCATGGCCGAGCCGACCAACGTCAGATCCATGTCCTTCGTCGGCACCCACGAGTATTTGGCGCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACATTCGGGATCTTCCTCTACGAGCTACTCCACGGAACGACGCCGTTTAAAGGATCTGGAAACAGAGCTACTCTGTTCAACGTCGTCGGACAGCCACTTAGATTCCCTGATGCGCCGCTGGTGAGTCTGGCGGCGAGGGATCTGATCAGAGGCCTTCTCGTGAAGGAGCCGCAAAAGAGAATCGCGTATCGAAGAGGAGCAACTGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAATTGGGCGTTGGTCAGAAGTGCTATGCCGCCGCACGTGCCGGAGCCAGTCGATTTCACGCAGTTCGCCAGTAAGAAGGGCGGTGGCGGCAGCCTTGGTGGCGGAGTGGTGGAAGAGAAGAAGGGGATGGAAGTAGCAGCGGCGGCGGCGGCGGGGGAGAATTCTTCTCCGCCTTCTGCTGGTAGCGATCCCAATTATGAGGATTTTGAGTACTTCTAG 1683 52.64 MMDYILRRNLIGDRDLLQPLLMWSKSDNKPDGSEMFSNSSKGENDSYGGIVKNHPDSLRRIDQIAKNGVNSGNQTVATMNSEAATNNKNSFTPAKSGGDNFRCDSMETTCRSETTPGVVIKPHTGGDVRWDAINMVSKGGQLNLSHFRLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNTNGNSNTGNGGSNGGSGGILDDEFAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPDAPLVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFTQFASKKGGGGSLGGGVVEEKKGMEVAAAAAAGENSSPPSAGSDPNYEDFEYF 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45106611 45110183 + Hsped.04g02390.1 Hepe04g0239 567377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0239 560 FunFam serine/threonine-protein kinase D6PK-like 231 298 - -
Hepe04g0239 560 CDD STKc_phototropin_like 145 506 - -
Hepe04g0239 560 Gene3D Transferase(Phosphotransferase) domain 1 361 503 - -
Hepe04g0239 560 Gene3D Transferase(Phosphotransferase) domain 1 231 300 - -
Hepe04g0239 560 FunFam Serine/threonine-protein kinase AGC1-7 378 503 - -
Hepe04g0239 560 PANTHER FLIPPASE KINASE 1-RELATED 81 508 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Hepe04g0239 560 FunFam Serine/threonine-protein kinase AGC1-5 145 230 - -
Hepe04g0239 560 MobiDBLite consensus disorder prediction 534 560 - -
Hepe04g0239 560 Gene3D Phosphorylase Kinase; domain 1 145 230 - -
Hepe04g0239 560 MobiDBLite consensus disorder prediction 27 53 - -
Hepe04g0239 560 SUPERFAMILY Protein kinase-like (PK-like) 138 506 IPR011009 -
Hepe04g0239 560 SMART serkin_6 147 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0239 560 ProSiteProfiles Protein kinase domain profile. 147 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0239 560 MobiDBLite consensus disorder prediction 30 46 - -
Hepe04g0239 560 Pfam Protein kinase domain 148 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0239 560 Pfam Protein kinase domain 379 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0239 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0239 Hepe-Chr4:45106611 Hepe04g1697 Hepe-Chr4:72109626 1.07e-183 dispersed
Hepe04g0239 Hepe-Chr4:45106611 Hepe07g1432 Hepe-Chr7:47620532 2.18e-186 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72700 PF00069 Pkinase 1.60E-37 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0239 - - - 0.0