Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0241 ATGGGAGACGGCAATAACACCAACAGAGGCCTTGTCTCGGCCAACGCCGCCGCCAATTCCAACCGGAACAACGGCAGCCACCACAGGAAACCGGAGTGGCTACAGCAGTACGATCTGATAGGGAAGATCGGAGAGGGAACCTATGGCCTTGTGTTCCTTGCTAAAATCAAACCCCCTTCTCCGAGTCGCGGCAAGTCCATTGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATAACACATGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAACCATGCCGATATGTCGCTGTATCTAGCTTTTGATTATGCTGAACATGACCTCTACGAAATCATTAGACATCATCGGGACAAAGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAACTGGATCATTCATCGTGATCTAAAGCCCTCAAATATTTTGGTAATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAGTATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATACGTGGGCGGTTGGATGTATTTTTGCTGAGCTTTTGACGTTGAAGCCATTATTTCAAGGGCAAGAAGTCAAAGGGACTCCGAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGACAAGTGGCCAACGCTTGCTAATCTTCCACATTGGCAACAAGATTTACAGCACATACAGGGGCACAAATATGACAATGTTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTCGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCTCTTGAGCATGAGTATTTTCGTTTAGAACCTCTGCCGGGATACAATACTCTGGTACCAATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACGGACTTTGAGGGAACAACCAACATTCAACCCTCACAAACGGTAACATCTGGAAATGCTGTAAACATGCAAGGTGCTCATGCTGTAAACAGATCCGTCTCTCGGCCAATGGCAGGAGTTGGCATGCAAAGGATTCCGCCTCAGAGCATGGCTGCGTATAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGTAGTATGAATCCTGGGGGCATCCCTATGCAGCGAGGTGTTTCTGCCCAAGCTCATCAGCAACAACAGTTGAGGAGAAAAGATCAAGGAATGGGAATGCCAGGTTATCCTCCGCAGCAGAAACAACAAAGACGCTACTGA 1476 46.54 MGDGNNTNRGLVSANAAANSNRNNGSHHRKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARVYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDTWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLDKWPTLANLPHWQQDLQHIQGHKYDNVGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNTLVPIQPGEKVINYPTRPVDTTTDFEGTTNIQPSQTVTSGNAVNMQGAHAVNRSVSRPMAGVGMQRIPPQSMAAYNLASQAGMGMNPGGSMNPGGIPMQRGVSAQAHQQQQLRRKDQGMGMPGYPPQQKQQRRY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45185773 45203082 + Hsped.04g02410.1 Hepe04g0241 567379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0241 491 SMART serkin_6 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0241 491 FunFam Cyclin-dependent kinase e-1 25 121 - -
Hepe04g0241 491 Gene3D Phosphorylase Kinase; domain 1 20 119 - -
Hepe04g0241 491 CDD STKc_CDK8_like 36 348 - -
Hepe04g0241 491 Gene3D Transferase(Phosphotransferase) domain 1 120 359 - -
Hepe04g0241 491 ProSitePatterns Protein kinases ATP-binding region signature. 43 71 IPR017441 GO:0005524(InterPro)
Hepe04g0241 491 SUPERFAMILY Protein kinase-like (PK-like) 31 349 IPR011009 -
Hepe04g0241 491 ProSiteProfiles Protein kinase domain profile. 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0241 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0241 491 PANTHER CELL DIVISION PROTEIN KINASE 36 348 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Hepe04g0241 491 FunFam Putative cyclin-dependent kinase E-1 122 361 - -
Hepe04g0241 491 MobiDBLite consensus disorder prediction 444 491 - -
Hepe04g0241 491 Pfam Protein kinase domain 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0241 Hepe-Chr4:45185773 Hepe10g1534 Hepe-Chr10:52091184 2.07e-72 dispersed
Hepe01g0154 Hepe-Chr1:26638225 Hepe04g0241 Hepe-Chr4:45185773 8.79e-48 wgd
Hepe04g0241 Hepe-Chr4:45185773 Hepe04g0381 Hepe-Chr4:52457355 1.21e-17 wgd
Hepe04g0241 Hepe-Chr4:45185773 Hepe06g0383 Hepe-Chr6:14344402 1.27e-54 wgd
Hepe04g0241 Hepe-Chr4:45185773 Hepe07g1035 Hepe-Chr7:14915394 2.30e-51 wgd
Hepe04g0241 Hepe-Chr4:45185773 Hepe07g1598 Hepe-Chr7:55767256 1.83e-46 wgd
Hepe04g0241 Hepe-Chr4:45185773 Hepe09g1602 Hepe-Chr9:46187710 1.64e-47 wgd
Hepe04g0241 Hepe-Chr4:45185773 HepeContig66g0067 Hepe-ChrContig66:5589760 4.60e-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72701 PF00069 Pkinase 3.10E-67 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0241 K02208 - csv:101203984 901.738