Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0308 ATGGCTGACCCATGTTCCAACTCATTACCAAGTGTTCTAAAATTCAACTCCCTCCACCACCATTTTCCACCCTCACAATCTTCAATCCGTCCTCCACAGGTGAATATGTCTCCCAATTGTTTCTCTTATCCCTACCCGACACCACCTCCACCGCCGTCTCCGCCGCTCCGAGAGGCTCTGCCACTTCTCGGGCTGATGTCTCCACCCGAGCAGCGGCGGGAGCAAGAGGAAGAAGACGACGGCGGAGGCGGCAGAGGGGACGACGAGTCGGTAACCGTGGCACTCCACATAGGGCTACCGAGCCCTAGCGCGGCCGAGATAGCTTCTGTGATGTGTGGGTCTTCATCTGAAATTGATCATGTTGGTGATGGTGATCATAGTAGTAACAATAATAATAACCATGATCATGATTTTGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCAACCCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCATGGCTCTCAGTACAGAAAAGGCCCCGAATCACTCCGGGGCACGCAGCCAACGGGCATGCTACGGCTTCCTTGCTACTGCTGCGCACCGGGGTGCCGCAACAACATCGACCATCCCCGGGCCAAGCCGCTCAAGGACTTCAGAACACTGCAAACACACTACAAGCGCAAGCACGGTCTGAAGCCCTTCATGTGCCGCAAGTGCGGCAAGGCGTTCGCCGTGCGCGGGGACTGGCGGACACATGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCTGATTTCAAGCACAAGCGTTCCCTCAAGGACCATGTCAAGGCCTTCGGTAACGACCATGCCGCGTACGGCGGTGGTGGGATCGACGGGTTTGGAGATGAAGAGGATGAGCCTGCTTCTGAAGTCGAACAAGATAACGATGAGTGA 987 53.9 MADPCSNSLPSVLKFNSLHHHFPPSQSSIRPPQVNMSPNCFSYPYPTPPPPPSPPLREALPLLGLMSPPEQRREQEEEDDGGGGRGDDESVTVALHIGLPSPSAAEIASVMCGSSSEIDHVGDGDHSSNNNNNHDHDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48818921 48821682 + Hsped.04g03080.1 Hepe04g0308 567446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0308 328 MobiDBLite consensus disorder prediction 306 328 - -
Hepe04g0308 328 FunFam zinc finger protein WIP2-like 164 187 - -
Hepe04g0308 328 MobiDBLite consensus disorder prediction 116 137 - -
Hepe04g0308 328 MobiDBLite consensus disorder prediction 23 89 - -
Hepe04g0308 328 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Hepe04g0308 328 MobiDBLite consensus disorder prediction 42 58 - -
Hepe04g0308 328 SMART c2h2final6 165 187 IPR013087 -
Hepe04g0308 328 SMART c2h2final6 249 269 IPR013087 -
Hepe04g0308 328 FunFam Zinc finger protein WIP2 218 300 - -
Hepe04g0308 328 Pfam Zinc finger, C2H2 type 165 184 IPR013087 -
Hepe04g0308 328 MobiDBLite consensus disorder prediction 310 328 - -
Hepe04g0308 328 SUPERFAMILY beta-beta-alpha zinc fingers 234 269 IPR036236 -
Hepe04g0308 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Hepe04g0308 328 PANTHER ZINC FINGER PROTEIN WIP2 36 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Hepe04g0308 328 MobiDBLite consensus disorder prediction 23 41 - -
Hepe04g0308 328 SUPERFAMILY beta-beta-alpha zinc fingers 161 187 IPR036236 -
Hepe04g0308 328 Gene3D Classic Zinc Finger 164 187 - -
Hepe04g0308 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 269 IPR013087 -
Hepe04g0308 328 Gene3D Classic Zinc Finger 212 302 - -
Hepe04g0308 328 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 248 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0273 Hepe-Chr4:46967259 Hepe04g0308 Hepe-Chr4:48818921 1.42e-227 dispersed
Hepe04g0308 Hepe-Chr4:48818921 Hepe05g0565 Hepe-Chr5:7947960 5.45e-133 dispersed
Hepe02g2725 Hepe-Chr2:75570150 Hepe04g0308 Hepe-Chr4:48818921 9.84e-108 transposed
Hepe10g0981 Hepe-Chr10:36769382 Hepe04g0308 Hepe-Chr4:48818921 1.65e-104 wgd
Hepe04g0308 Hepe-Chr4:48818921 HepeContig66g0154 Hepe-ChrContig66:13039420 6.98e-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55354 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0308 - - - 0.0