Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0325 ATGGCTTCCCCCTTCTTCAAACCTCCATTCTTCCTCTCTTTACTCTTCATTTTCTTCATTTTGGGTTCTTCTTCATCTCAGGAATCGACCCTTTTGACCTTCAAATCTTCCATCAAAGATTCAACTAACTCTCTCTCGAACTGGGTTTCTTCTTCTCCGACCCATTTCTGTAATTGGACTGGGATTTCTTGTGTCAACGTATCTTCTTCTTCTTCGCTTTCGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAATCTCTCTGGTGAAATTTCGTCTTCCATTTGTGAACTCCCTCGTTTGGCCCATCTTAACCTTGCCGATAATCGCTTCAATCAGCCCATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGCAATAATATGATCTGGGGCACCATTCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTTGGGAAGAATCATATTGAAGGGAAGATTCCTGACGGGATTGGGGCTTTGAAGAATCTTCAAATTCTGAATCTGAGAAGCAATTTGATTTCTGGTAGAGTTCCTTCTGTTGTCTTTCATAATCTTACTGAACTTCTTGTTGTTGATTTGTCTGAAAATGCTTATCTTTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGAGAAGCTTGAGGAGCTATGGCTTCAAACCTCTGGTTTCTATGGTGAAATCCCTTTTTCTTTGATGGGTTTGAGAAGTTTGACTGTTTTGGATCTTTCTCAGAACAATCTCACTGGGAAAATCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTACTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGGTTTGTAGTGGAAAAGGGCTTGTGAGTCTTAGTCTTCATACCAATTTTTTCACTGGGATTTTGCCTAATTCCTTGAATCAGTGCTTGAATCTCGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCAGGGGATTTTCCCAAATCCTTGTGGTCATTGCCTAAGATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAGTTCCTGAGTCTATATCAATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCGAGTAAGATACCCTGGGGTCTTGGGTCGATTCGGAGCTTATACCGATTCTCTGCGTCGCTCAATCACTTTTATGGTGAATTGCCACCGAACTTCTGTGATTCGCCGTTGATGAGTATAATTAATCTGTCTCACAATTCTCTTTCGGGACGGATTCCCGAGCCCAAAAACTGCAAGAAACTGGTGTATTTGTCCTTGGCAGGCAATAGTCTTACTGGAGAAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATACCTCAAGGACTCGAAAACTTGAAGCTAGCGCTCTTTAACGTCTCGTTCAATCGATTATCGGGCGCTGTTCCGTTCTCTTTGATTTCAGGGCTACCGGCTTCGTTTCTTCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAGACTCCTTGTTCTCAAGGCCATCCGATAAACCATATGTCTGGACTTAACAAAATGACATGCGCACTCATATCTATAGCTTGTGTTCTAGGAGTTATGAGCTTAGCTGCCGGGTTCTTTCTGTATTACCGATCCTACAAGCCGAAATCTCGAGTCGATAACTGGCATTCGGTTTACTTCTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGGGGACCGTTTGGCCAAGTGTTCATTTTAAGCTTACCGAGCCGTGAACTGATCGCCGTAAAGAAACTGGTTAACTTCGGGAGTCGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACATTGGCCAAGATCAGGCACAAGAACATCATAAAAATTCTGGGGTTTTGCTATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTGAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAACTTACATTCAAAAGGACTATGTCCCTCATTTACTTCATCGAAACGTTAAATCGTCAAACATTCTATTGGATGCCGACTTTGTCCCAAAGCTCACGGATTTTGCTCTTCACCATATTGTTGGAGAGTCAGCATTTCACTCGACAGTGGCTTCGGAATCTGCTCATTCCTGCTATATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAACTGGTGACTGGTAGACAAGCCGAGCGATCGGAATCAACGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTCTTGGAGCATTCTCAACGACAAATGCTGGAAGCTCTAGAAATTGCCCTCCAATGCACTTCTATGATGCCTGAAAAACGACCATCGATGCTCGAAGTCGCCAAGGCGCTGCAACTGATCGGCTTGACTATGAACCTCCACGACGCAGCCTTCTCGGCTGCAGAGGATGGTTTGGTTCCGAGCTGA 2676 43.57 MASPFFKPPFFLSLLFIFFILGSSSSQESTLLTFKSSIKDSTNSLSNWVSSSPTHFCNWTGISCVNVSSSSSLSLSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNMIWGTIPDQISLFGSLRVLDFGKNHIEGKIPDGIGALKNLQILNLRSNLISGRVPSVVFHNLTELLVVDLSENAYLLSDIPSEIGKLEKLEELWLQTSGFYGEIPFSLMGLRSLTVLDLSQNNLTGKIPEMLGSSLKNLVYFDVSENKLVGSFPNGVCSGKGLVSLSLHTNFFTGILPNSLNQCLNLERFQVQNNGFSGDFPKSLWSLPKIKLIRAENNGFSGEVPESISMAAQLEQVQLDNNSFSSKIPWGLGSIRSLYRFSASLNHFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVYLSLAGNSLTGEIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNRLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPINHMSGLNKMTCALISIACVLGVMSLAAGFFLYYRSYKPKSRVDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGPFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCYSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLTYIQKDYVPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGESAFHSTVASESAHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDPSVLEHSQRQMLEALEIALQCTSMMPEKRPSMLEVAKALQLIGLTMNLHDAAFSAAEDGLVPS 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49899240 49902566 + Hsped.04g03250.1 Hepe04g0325 567463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0325 891 Pfam Protein tyrosine and serine/threonine kinase 608 867 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0325 891 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 675 874 - -
Hepe04g0325 891 SUPERFAMILY L domain-like 210 520 - -
Hepe04g0325 891 ProSiteProfiles Leucine-rich repeat profile. 246 268 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 868 IPR050647 -
Hepe04g0325 891 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 Gene3D Ribonuclease Inhibitor 268 531 IPR032675 -
Hepe04g0325 891 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 Gene3D Phosphorylase Kinase; domain 1 606 675 - -
Hepe04g0325 891 FunFam Leucine-rich repeat family protein 26 188 - -
Hepe04g0325 891 Gene3D Transferase(Phosphotransferase) domain 1 676 880 - -
Hepe04g0325 891 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Hepe04g0325 891 SUPERFAMILY Protein kinase-like (PK-like) 608 874 IPR011009 -
Hepe04g0325 891 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 267 531 - -
Hepe04g0325 891 Gene3D Ribonuclease Inhibitor 26 146 IPR032675 -
Hepe04g0325 891 ProSiteProfiles Protein kinase domain profile. 599 870 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0325 891 SUPERFAMILY L domain-like 25 291 - -
Hepe04g0325 891 PRINTS Leucine-rich repeat signature 460 473 - -
Hepe04g0325 891 PRINTS Leucine-rich repeat signature 247 260 - -
Hepe04g0325 891 ProSiteProfiles Leucine-rich repeat profile. 462 485 IPR001611 GO:0005515(InterPro)
Hepe04g0325 891 Gene3D Ribonuclease Inhibitor 161 267 IPR032675 -
Hepe04g0325 891 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 589 674 - -
Hepe04g0325 891 SMART LRR_typ_2 98 122 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 244 268 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 460 484 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 269 293 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 195 220 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 170 194 IPR003591 -
Hepe04g0325 891 SMART LRR_typ_2 123 146 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0285 Hepe-Chr4:48007645 Hepe04g0325 Hepe-Chr4:49899240 0.0 dispersed
Hepe04g0325 Hepe-Chr4:49899240 Hepe07g1890 Hepe-Chr7:62523144 3.91e-56 dispersed
Hepe01g0190 Hepe-Chr1:30929819 Hepe04g0325 Hepe-Chr4:49899240 3.41e-41 wgd
Hepe02g2209 Hepe-Chr2:62428442 Hepe04g0325 Hepe-Chr4:49899240 1.77e-39 wgd
Hepe04g0325 Hepe-Chr4:49899240 Hepe09g1372 Hepe-Chr9:22427096 1.01e-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72705 PF07714 PK_Tyr_Ser-Thr 3.50E-37 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0325 - - - 0.0