Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0345 ATGACCCCATTCCCCTCATTAATCCTCACATTCTTCTCATTTCTCATTCCCCTCTCTTCCTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCCCTCAAGGCCGCCATTGAAACCGACCCATCTCACGTCCTCGAGTCCTGGTCCGAGTTCGACTCAACCCCATGCCACTGGCCTGGGATCGTCTGCACTCACGACCGAGTCACCCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCTTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGCCTCACTCTCTCCTTCAACAATTTCTCTAAACCGATTCCTTCCCATCTCTACAACGCCACCAATCTCGTCCTTCTCGATCTATCTCACAATTCCCTCTCCGGTCCCGTTTCGGATCAAATCGCCGACCTCACCAAGCTTCGCCATCTCGATTTCTCCTCCAATTTCCTCAATGGGTCTCTCCCCAACCGGTTAACGGACTTGACCGAACTCGTCGGGACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTCCCGCCGTCCTTTGGAAACCTCCCGCTGATTGTGAATCTCGATGTCCGTCACAACAATCTCACCGGGAAGATCCCGCAGGTGGGTTCCCTGTTGAATCAAGGCCCGACGGCTTTCTCCGGCAACCCGAGTCTCTGTGGGTTTCCGTTACAGACGCCATGTCCGGAAGCTCAGAACCCGAACGTTTTCCCCGAGAATCCACAGAATCCCAAGTCTCTAAACGGTAATTTCCCCGGGTACGGCGGCGGGAGAGCGACAGGCGGTGGAGGTGGGAGAGCCGCCGCGTCGGCGACGGTGGCGGTGGTGTCGTCGATATTCGCGGTGGTGGGAGCGGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGGTGGAGAAGGGAGGGCAAGGGAGGGCAAAACGGGAAAGGGGAGTCCGGAGAGGGAGATTGTGGGGGAGTTGGAAGGGCAAGATGGTAAATTCGTGGTAATGGATGAAGGGATGAATTTGGAATTAGAAGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTATAAAGTAGTGGCGGGGCGGGGATCGGGTGCGGGCGCGAGTATTGTAGCAGTTAGAAGACTTAACGATGGTGATGCCACGTTGACGTATAAGGATTTTGAGAATGAGATTGAGTCCATTGGTAGGGTCCACCATCCTAACATCGTACGGTTGAGAGCTTATTACTATGCAACTGATGAGAAATTGCTGGTCACTGATTTCATCAAAAATGGAAGCTTGCACTCTCTCCTACATGGAGGCCCCTCCAGTTCTTTGCCACCTTTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGATTTTGGTGCTCGGAAATACGTACATGGAAATGTAAAAACTACGAAAATCCTTCTCGACGATGATCTCGAGCCTTACGTTTCAGGTTTTGGGCTCACTCGTCTCGGCCAAGGAACACCTAAGTTCACTGCAACCTCATCCAAAAAGTTGAGCTCAAGCCAGACTATGATAACCTCAATCATGGGGCCAAGCATTTCAACTCCCTCGGCGATGTACTTGGCGCCCGAGGTTCGGGAGTTTGGAGGGAAGTACACTCAGAAATGTGACGTATATTCATTTGGTATCGTCCTCCTAGAACTTTTGAGCGGTAAATTGCCCGATGCAGGATTGGAAAATGATGGGAAGGGGTTGGAATGTTTTGTGAGAAAGGCGTTTCAAGAAGAACGCCCCTTGACCGAGGTTATAGACCCGGCACTTGTGCCTGAGATTTATGCCAAGAAACAAGTGGTTTCGACGTTTCACATTGCACTAAATTGCACAGAACTTGATCCCGAGCTGCGTCCGAGAATGAGAACAGTATCGGAGAGTCTCGATCGAATCAAATCTCAGTGA 1956 52.35 MTPFPSLILTFFSFLIPLSSSLNSDGLSLLALKAAIETDPSHVLESWSEFDSTPCHWPGIVCTHDRVTQLSLPNKGLTGYIPSELGLLDSLRRLTLSFNNFSKPIPSHLYNATNLVLLDLSHNSLSGPVSDQIADLTKLRHLDFSSNFLNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNVFPENPQNPKSLNGNFPGYGGGRATGGGGGRAAASATVAVVSSIFAVVGAVSLTVWWFRRKGGEGRAREGKTGKGSPEREIVGELEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSGAGASIVAVRRLNDGDATLTYKDFENEIESIGRVHHPNIVRLRAYYYATDEKLLVTDFIKNGSLHSLLHGGPSSSLPPLPWSARLKIAQGAARGLAYIHDFGARKYVHGNVKTTKILLDDDLEPYVSGFGLTRLGQGTPKFTATSSKKLSSSQTMITSIMGPSISTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGKLPDAGLENDGKGLECFVRKAFQEERPLTEVIDPALVPEIYAKKQVVSTFHIALNCTELDPELRPRMRTVSESLDRIKSQ 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51100816 51105759 + Hsped.04g03450.1 Hepe04g0345 567483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0345 651 ProSiteProfiles Protein kinase domain profile. 346 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0345 651 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Hepe04g0345 651 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Hepe04g0345 651 SUPERFAMILY L domain-like 23 228 - -
Hepe04g0345 651 Gene3D Phosphorylase Kinase; domain 1 328 427 - -
Hepe04g0345 651 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Hepe04g0345 651 SUPERFAMILY Protein kinase-like (PK-like) 351 645 IPR011009 -
Hepe04g0345 651 Gene3D Transferase(Phosphotransferase) domain 1 428 651 - -
Hepe04g0345 651 FunFam Leucine-rich repeat receptor-like kinase 27 131 - -
Hepe04g0345 651 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515(InterPro)
Hepe04g0345 651 Pfam Protein tyrosine and serine/threonine kinase 352 645 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0345 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 649 IPR046959 -
Hepe04g0345 651 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Hepe04g0345 651 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Hepe04g0345 651 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0345 Hepe-Chr4:51100816 Hepe10g1528 Hepe-Chr10:52008438 2.80e-109 dispersed
Hepe04g0345 Hepe-Chr4:51100816 Hepe01g1165 Hepe-Chr1:76776293 3.75e-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72706 PF07714 PK_Tyr_Ser-Thr 4.00E-26 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0345 - - - 0.0