Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0385 ATGGGAACTCCGGAATTCCCTAATCTTGGGAAGCATTGCTACGTTCAAGATTGTAAGCAGATCGATTTCTTACCCTTTACTTGCGATTGCTGTCACCAGGTATTCTGTTTAGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAAATGGGATGTCACTGTTGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCATTCCTGATCAAGATCCAAACATTACTTGGGAGATACATGTGAACAATGAATGTGACCCTTCAAATTATGATAAGGTCACAAAGAAGAAAAAGTGTCCTGTACCCGGCTGCAGGGAGTTGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTTGATAGAACATTGCTTGAAGCACCGTTTTGGACCTGACCATAAATGTCCTGGACCCAAAAAACCAGAACCAACAGGTTTTCCATTTGTTGGTCTTTTAAGTAGAAGTAGAAAAGATGAGAAAGGGCCTAAGAAGGCAGTGCCCACCACATCTTCCTCTCGGTGGACTACAAGCCTCCTTAATGCAGCCTCATCTGTTAAATCCTCAGCCGAAGCTAGTATGACGAAGTTGTCGAATGATTTCAGTCAAGCCTGGAAAACATCAGGCAGCAGTGAAGGTGGAAATGGACAAGTCGAGCAATGTCCACAATGTGACGCCAAGTTTTCGTCGGTTTCATCGTTAATAGACCATGTCGAAAAAGTCCATGAAAGGGGTGGCAATCGACCGGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCAAAGTGTAGTAAAGGATTTGTCGATCCTGTTGCCCTCGTGGAGCATATTGAGAAGGATCATGGTGGTACGTCAAAAGCTTGA 864 44.68 MGTPEFPNLGKHCYVQDCKQIDFLPFTCDCCHQVFCLEHRSYNRHSCPKADKWDVTVVICPLCAKGVRLIPDQDPNITWEIHVNNECDPSNYDKVTKKKKCPVPGCRELLTFSNTIKCRDCLIEHCLKHRFGPDHKCPGPKKPEPTGFPFVGLLSRSRKDEKGPKKAVPTTSSSRWTTSLLNAASSVKSSAEASMTKLSNDFSQAWKTSGSSEGGNGQVEQCPQCDAKFSSVSSLIDHVEKVHERGGNRPGAKKVVIDACPKCSKGFVDPVALVEHIEKDHGGTSKA 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52629062 52631725 + Hsped.04g03850.1 Hepe04g0385 567523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0385 287 Gene3D - 80 147 IPR035896 -
Hepe04g0385 287 SMART c2h2final6 220 243 IPR013087 -
Hepe04g0385 287 SMART c2h2final6 99 129 IPR013087 -
Hepe04g0385 287 SMART c2h2final6 258 281 IPR013087 -
Hepe04g0385 287 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Hepe04g0385 287 ProSitePatterns Zinc finger C2H2 type domain signature. 222 243 IPR013087 -
Hepe04g0385 287 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 246 - GO:0005737(PANTHER)
Hepe04g0385 287 Gene3D - 2 59 IPR035896 -
Hepe04g0385 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 243 IPR013087 -
Hepe04g0385 287 Pfam Zinc finger, C2H2 type 260 281 IPR013087 -
Hepe04g0385 287 SUPERFAMILY AN1-like Zinc finger 4 60 IPR035896 -
Hepe04g0385 287 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270(InterPro)
Hepe04g0385 287 Pfam AN1-like Zinc finger 101 142 IPR000058 GO:0008270(InterPro)
Hepe04g0385 287 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Hepe04g0385 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 286 IPR013087 -
Hepe04g0385 287 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Hepe04g0385 287 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Hepe04g0385 287 Pfam C2H2-type zinc finger 221 243 - -
Hepe04g0385 287 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Hepe04g0385 287 Gene3D Classic Zinc Finger 183 286 - -
Hepe04g0385 287 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55357 PF01428 zf-AN1 1.00E-07 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0385 - - - 0.0