Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0387 ATGGCCTTTTTGTGTTGTTCTCTCTTCATTTTGTTTGTTGGGGTTCTTTCAAATTCCTTGTTTTTGGGAGCTGCTGAGTTTGATGATCAAATCATTATGTCCACCATTAGAGAGGAGCTTCAAGTTCCTGGTTGGAGCTCCAATATCTCTGAGTATTGTTCTTGGAAAGGTGTTTTCTGTGGTTTGAATCATTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAATTTAACTGTGGTTTCTGAGCTCAAAGCTTTGAAATGGCTGGACTTATCCTTAAATGACTTTCACGGCGAAATTCCGTCCAGTTTTGCGAAGTTATCCGAGCTTGAATTCCTTGATTTGTCTGTGAACAAGTTCGATGGTAAGATCCCATCTCTGTTGTTGGGGGGTCTCAAGAATCTCAAGTCATTGAACCTCTCTAATAATCTGCTGGTTGGAGAAATTCCAAATGAGCTTCAAGGATTAGAGAAGTTGGAGGAATTTCAAGTTTCTAGCAACAGGTTGAGTGGTTCAATTCCAATTTGGGTTGGAAATTTGACTCATCTCAGAGTTTTTACAGCCTATGAGAATGAATTTGGTGGAGTAATTCCTGATAATCTCGGTTCGGTTTCTGAGCTCCAATTGTTGAATCTGCATACCAACAAGCTTGAAGGCCCGATTCCCCGAAGTGTTTTCGCTTTGGGGAAGCTTGAGATTTTGGTTTTGACACAAAATAGCTTGAATGGGAACCTTCCTGAAGAGATTGGGAACTGCAAAACCCTTACTAGCGTTCGGATCGGGAACAACGATCTTGTTGGTGTGATTCCTCCAGCCATTGGCAATGTTAGTAGCCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCGGGTGATATACCGCCTCAGTTTTCGCGGTGCTCTAATCTTATTCTGCTGAATCTAGCCTCAAATGGATTCACTGGGACGATTCCTCCCGAGCTTGGAGAACTGATGAATCTGCAGGAGCTTATTCTTTCTGGTAACAGCCTGTATGGTGATATTCCGAGATCGATGCTCGGGTGCAAGAACCTCAACAAGCTTGATTTGAGCAGCAATAGATTTAATGGTACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCTAATGAGATTGGAAAATGCACAAAGCTTCTCGACCTGCGACTCGGAAGTAACTATTTAACGGGAAGCATCCCTTCCGAGATTGGTCACATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCAGTGCCCCCTGAGTTGGGGAAACTGGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGATATCCCGTCCGAACTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCGAATAATCTGCTTACAGGTTCAATTCCCTTTTTTGTTCCATTTCAGAAAAGTGCAAATTCCAGTTTTCTGGGGAATGAAGGCCTCTGCGGGGTGCCACTAAGCATTTCGTGTAAAAATTCGATTGGTTCATACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATACTGGCTGTCATCGGTTCTGGGCTGGCAGTTTTCGTATCGGTTACTATAGTCGTCCTACTTTTTGTGATGAAAGAAAAGCAGGAAAAGGCAGCAAAATCTACAAGTACTGCAGATGATGCAACTATCGACGATCAACCAACGATAATTGCAGGAAATGTCTTCGACGATAATCTCCGACAGGAAATAGATCTCGATGCTGTCGTTAAAGCAACATTGAAGGATTCAAACAAGCTCATCTTTGGCACTTTTAGCTCCGTTTATAAGGCTGTTATGCCTTCGGGTATGATCGTATCGGTTAAGAGACTGAAATCCATGGATAAGACAATCATTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGCAAACTGAGCCATGATAATCTTTTGCAACTTATTGGATATGTAATATATGAAGATGTGGCTTTGTTGCTTCATCATTACTTACCCAATGGGACATTGGCTCAGCTTCTTCATGAGTCCACAAAACAACTTGAATATGAAGCTGATTGGCCCACAAGATTTTCAATTGCCATTGGAGCAGCAGAAGGGCTAGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATTTCATCATCCAATGTTCTTTTGGATGCCAACTTCAAACCTTTGATTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTTGCAGGTTCATTTGGCTACATTCCACCAGAATATGCCTACACGATGCAAGTTACGGCCCCGGGAAATGTTTATAGCTACGGTGTTATCTTGCTTGAGATCCTCACTACCAGACTGCCAGTTGATGAGGAGTTTGGTGAGGGAGTAGACTTGGTGAAGTGGGTGCATAGTGCTCCCTCAAGGAGCGAAACGCCTGAACAGATACTCGATTCCCGGCTGAGCACAGTGTCGTTTGGCTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCAAAAATGAAGAAGGTGGTTGAAATGCTTATGGAGATCAAACAAAATTGA 2679 42.14 MAFLCCSLFILFVGVLSNSLFLGAAEFDDQIIMSTIREELQVPGWSSNISEYCSWKGVFCGLNHSMVETLDLSGHSLRGNLTVVSELKALKWLDLSLNDFHGEIPSSFAKLSELEFLDLSVNKFDGKIPSLLLGGLKNLKSLNLSNNLLVGEIPNELQGLEKLEEFQVSSNRLSGSIPIWVGNLTHLRVFTAYENEFGGVIPDNLGSVSELQLLNLHTNKLEGPIPRSVFALGKLEILVLTQNSLNGNLPEEIGNCKTLTSVRIGNNDLVGVIPPAIGNVSSLAYFEVDNNHLSGDIPPQFSRCSNLILLNLASNGFTGTIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGHIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGVPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSTSTADDATIDDQPTIIAGNVFDDNLRQEIDLDAVVKATLKDSNKLIFGTFSSVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHDNLLQLIGYVIYEDVALLLHHYLPNGTLAQLLHESTKQLEYEADWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLIGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRSETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLMEIKQN 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52644201 52647665 - Hsped.04g03870.1 Hepe04g0387 567525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0387 892 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 431 449 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 234 256 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 Pfam Leucine Rich Repeat 90 111 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 CDD STKc_IRAK 620 889 - -
Hepe04g0387 892 Pfam Protein tyrosine and serine/threonine kinase 615 885 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0387 892 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 581 689 - -
Hepe04g0387 892 SUPERFAMILY L domain-like 42 342 - -
Hepe04g0387 892 Gene3D Phosphorylase Kinase; domain 1 576 689 - -
Hepe04g0387 892 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 68 891 IPR050647 -
Hepe04g0387 892 Gene3D Ribonuclease Inhibitor 234 522 IPR032675 -
Hepe04g0387 892 Gene3D Transferase(Phosphotransferase) domain 1 690 892 - -
Hepe04g0387 892 ProSitePatterns Tyrosine protein kinases specific active-site signature. 734 746 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0387 892 SUPERFAMILY Protein kinase-like (PK-like) 613 888 IPR011009 -
Hepe04g0387 892 Gene3D Ribonuclease Inhibitor 180 233 IPR032675 -
Hepe04g0387 892 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 228 523 - -
Hepe04g0387 892 FunFam Nuclear pore complex protein NUP107 33 179 - -
Hepe04g0387 892 SMART LRR_typ_2 160 184 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 328 352 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 449 472 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 376 400 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 232 256 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 136 159 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 111 135 IPR003591 -
Hepe04g0387 892 SMART LRR_typ_2 87 110 IPR003591 -
Hepe04g0387 892 SUPERFAMILY L domain-like 259 516 - -
Hepe04g0387 892 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Hepe04g0387 892 ProSiteProfiles Protein kinase domain profile. 611 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0387 892 Pfam Leucine rich repeat 330 389 IPR001611 GO:0005515(InterPro)
Hepe04g0387 892 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 690 892 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0387 Hepe-Chr4:52644201 Hepe06g0078 Hepe-Chr6:2512610 3.29e-59 dispersed
Hepe04g0387 Hepe-Chr4:52644201 Hepe05g1725 Hepe-Chr5:67492203 2.79e-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72708 PF00069 Pkinase 5.70E-28 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0387 - - - 0.0