Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0485 ATGGGATCTTCCGTTGCTGCAATGAGCATGGTTTCCGAGTCCAAATTCCATGTTCTTGCTGTCGATGATAGCATCATCGATAGGAAATTGATTGAAAGACTCCTTAAAACCTCCTCTTATCAAGTCACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGATATGACCTTGGAAATAACTCGATTCCTTCTGTTTTGCCTAACCATCTTCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTAATTACTGATTACTGTATGCCTGGGATGACTGGATATGATTTGTTAAAGAAGATCAAGGGGTCTAAAACTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTTCGACTCTCCGATGTCAACAGGCTTAAACCTCACATGTTGAAAACCAAACTCAAATGTGACGAACCAGAAAGAACAGAAGAAGGTGAGCCTGATTTGGGAAGCCAATCCCAAGCTCTAGAGCAGCCGCAACAACAGCAACAACAACAACATGAACAAGAACAAGAACAAGTACGATCAACGTTACCGCAGCAGGTCCCGACACTGCTGCAAGATCAAGATCGATTACAATCCGTACCACAGCTGCCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTACTCCCACCAACACCGCCGCAGCAATCGAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 819 43.47 MGSSVAAMSMVSESKFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDLGNNSIPSVLPNHLHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKTLRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLKPHMLKTKLKCDEPERTEEGEPDLGSQSQALEQPQQQQQQQHEQEQEQVRSTLPQQVPTLLQDQDRLQSVPQLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 56344491 56346415 - Hsped.04g04850.1 Hepe04g0485 567623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0485 272 SUPERFAMILY CheY-like 14 163 IPR011006 -
Hepe04g0485 272 Gene3D - 17 262 - -
Hepe04g0485 272 SMART REC_2 16 154 IPR001789 GO:0000160(InterPro)
Hepe04g0485 272 Pfam Response regulator receiver domain 77 146 IPR001789 GO:0000160(InterPro)
Hepe04g0485 272 MobiDBLite consensus disorder prediction 219 251 - -
Hepe04g0485 272 ProSiteProfiles Response regulatory domain profile. 17 155 IPR001789 GO:0000160(InterPro)
Hepe04g0485 272 MobiDBLite consensus disorder prediction 173 201 - -
Hepe04g0485 272 MobiDBLite consensus disorder prediction 158 172 - -
Hepe04g0485 272 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 223 IPR045279 GO:0009736(InterPro)
Hepe04g0485 272 CDD REC_typeA_ARR 18 150 - -
Hepe04g0485 272 MobiDBLite consensus disorder prediction 158 201 - -
Hepe04g0485 272 MobiDBLite consensus disorder prediction 219 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2525 Hepe-Chr2:71971938 Hepe04g0485 Hepe-Chr4:56344491 8.80e-64 dispersed
Hepe04g0485 Hepe-Chr4:56344491 Hepe09g0164 Hepe-Chr9:1312143 1.30e-46 dispersed
Hepe04g0485 Hepe-Chr4:56344491 Hepe05g0710 Hepe-Chr5:12677465 5.61e-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55363 PF00072 Response_reg 2.80E-18 CL0304 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0485 K14492 - csv:101220999 380.948