Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0519 ATGGCTTCAAGACCAATCGTTCCCCAACAAATCAGAGGTGAGGCAGCGATCGGCGGAGGAAAACAGGCGAAAGGCGGGGCGGTGGCGAACCGTCGAGCATTGGGTGATATTGGTAATCTGGTAACTGTTCGAGAAAATGAAGGAAAGGTTAATCGCCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGCTGCAAAAGTTGAAAATAATAAGAAACAAGTGCCTGTTAGTGTAGATGGGGCTGCTCCCATTCTTGATGGTGGTGTTAAGGCTGTTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGTCGTTAAAGCGAAACCAGAGGTGGTCGAGATAAGCCCCGATACCGTTAAACAAGATCGAGGCAAGGAAGTCAAATGTGCAAACAAGAAGAAGGAAGGAGAAGGGGCCTTAAAGAAGAAATCTCAGACTCTCAGTTCAGTCCTCACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACTAAGAAACCTAAAGAGCAGGTTTTTGATATTGATGCTGCAGACGTTGGCAATGAATTGGCAGAAGTTGAATACGTCGAGGACATTTACAAATTCTATAAGGAAGTTGAGAATGAAAACAGGCCTCATGACTACATGGATTCTCAGCCTGAGATAAACACTTCAATGAGGGCTATCTTGGTTGATTGGCTGGTTGATGTCCACAACAAGTTCGAGCTTTCTCCCGAAACATTCTACCTAGCGATAAATATAATTGATCGATTCCTTGCGACAAAGGTAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCAATGCTCATAGCCTCCAAATACGAAGAGATCTGGGCACCAGAGGTAAATGACTTCGTGTGCCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAGAAGATACTTGGAAAGCTGGAATGGACCTTCACTGTGCCTACACCATATGTTTTCCTCGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACGAGATGGAAAATCTGGTTTATTTTCTAGCTGAACTTGGCATAATGCATTACACCGCGGCAATGATGTACTGCCCGTCGATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGAGACTCTCAAACTGCACACTGGTTTCTCAGAGCGTCAATTAATTGATTGTGCAAAACTTCTGGCTGGATTCCATGGTGTAGCAAGCAAGAACAAGCTTCAAGTAATATTCCGAAAGTACTCGAGCTCCGAGCGGGCAGCGGTGGCGATGCTTCAGCCAGCGAAAGCTTTGTTGGCTCTTAGTTGA 1353 46.42 MASRPIVPQQIRGEAAIGGGKQAKGGAVANRRALGDIGNLVTVRENEGKVNRPITRSFCAQLLANAQAAAKVENNKKQVPVSVDGAAPILDGGVKAVVKKAGAPKPAHKKVVVKAKPEVVEISPDTVKQDRGKEVKCANKKKEGEGALKKKSQTLSSVLTARSKAACGVTKKPKEQVFDIDAADVGNELAEVEYVEDIYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSPETFYLAINIIDRFLATKVVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLAELGIMHYTAAMMYCPSMIAASAVYAARCTLKKTPAWDETLKLHTGFSERQLIDCAKLLAGFHGVASKNKLQVIFRKYSSSERAAVAMLQPAKALLALS 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57680920 57683236 + Hsped.04g05190.1 Hepe04g0519 567657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0519 450 CDD CYCLIN_AtCycB-like_rpt1 174 319 - -
Hepe04g0519 450 ProSitePatterns Cyclins signature. 226 257 IPR048258 -
Hepe04g0519 450 Pfam Cyclin, N-terminal domain 197 320 IPR006671 -
Hepe04g0519 450 Gene3D - 197 439 - -
Hepe04g0519 450 Gene3D - 211 322 - -
Hepe04g0519 450 PANTHER CYCLINS 172 430 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe04g0519 450 SMART Cyclin_C_2 324 443 IPR004367 -
Hepe04g0519 450 SUPERFAMILY Cyclin-like 325 445 IPR036915 -
Hepe04g0519 450 SMART cyclin_7 328 412 IPR013763 -
Hepe04g0519 450 SMART cyclin_7 231 315 IPR013763 -
Hepe04g0519 450 PIRSF Cyclin_A_B_D_E 2 450 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe04g0519 450 FunFam G2/mitotic-specific cyclin-1 312 438 - -
Hepe04g0519 450 Pfam Cyclin, C-terminal domain 324 442 IPR004367 -
Hepe04g0519 450 SUPERFAMILY Cyclin-like 186 320 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0519 Hepe-Chr4:57680920 Hepe08g0180 Hepe-Chr8:1558417 3.19e-121 dispersed
Hepe04g0519 Hepe-Chr4:57680920 Hepe01g2047 Hepe-Chr1:85134402 1.63e-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0519 K21777 - csv:101217210 702.205