Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0521 ATGAGGGAAGAACACTCGAATTGGTTCTCCAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATTACCCCCGATCTAGCTTTGGCTTTCGATATTCAAAATCCCAGCAATAACAGCAGTCCGCCGTTGCCCTGTCCTTCTCCGCCGCTTTCCAATCCCCTCCCCGGTTCCGGCAACGGAATTGCGCCTCCCAACTCGGCGGATTTCGGAGATTCTGGCGATTTGGGCTCCGGCGCCGCCAGTGACGAGCCGGCTCGAACCCTTAAGCGGCCGCGCTTAGTCTGGACGCCTCAGCTCCACAAGCGATTCGTCGATGCCGTTGCCCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTTATGAGTGTTGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGCGGCGGCGGGGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCTCATTTGCTTCACCCTGCTCGTGCCAGTTCAGAACATTTCATGCCCTTTGTTCCCATGGCCACCTTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGCCCATCCGCAGCTCCAGCCTCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCCCCGAATGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGGGCTCCAGTCCATAATTCAGTTCCTAATTACATTGATGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 903 54.93 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSGDLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGLVASSDPATDHLFASSPVPPHLLHPARASSEHFMPFVPMATLQQHHHHQQQMAAAAAVAAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIDDLESANATGGRKVLTLFPTGDD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 57695291 57697406 + Hsped.04g05210.1 Hepe04g0521 567659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0521 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 154 IPR017930 -
Hepe04g0521 300 Pfam Myb-like DNA-binding domain 101 150 IPR001005 -
Hepe04g0521 300 MobiDBLite consensus disorder prediction 47 61 - -
Hepe04g0521 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0521 300 Gene3D - 95 157 - -
Hepe04g0521 300 MobiDBLite consensus disorder prediction 1 93 - -
Hepe04g0521 300 MobiDBLite consensus disorder prediction 1 18 - -
Hepe04g0521 300 FunFam Two-component response regulator 94 157 - -
Hepe04g0521 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677(InterPro)
Hepe04g0521 300 SUPERFAMILY Homeodomain-like 95 155 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0521 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0521 Hepe-Chr4:57695291 Hepe10g1262 Hepe-Chr10:48112377 3.77e-42 dispersed
Hepe04g0521 Hepe-Chr4:57695291 Hepe05g0644 Hepe-Chr5:10475095 1.34e-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55366 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Hepe TF