Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Hepe04g0521	ATGAGGGAAGAACACTCGAATTGGTTCTCCAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATTACCCCCGATCTAGCTTTGGCTTTCGATATTCAAAATCCCAGCAATAACAGCAGTCCGCCGTTGCCCTGTCCTTCTCCGCCGCTTTCCAATCCCCTCCCCGGTTCCGGCAACGGAATTGCGCCTCCCAACTCGGCGGATTTCGGAGATTCTGGCGATTTGGGCTCCGGCGCCGCCAGTGACGAGCCGGCTCGAACCCTTAAGCGGCCGCGCTTAGTCTGGACGCCTCAGCTCCACAAGCGATTCGTCGATGCCGTTGCCCATTTGGGGATAAAAAATGCTGTCCCCAAGACCATAATGCAGCTTATGAGTGTTGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGCGGCGGCGGGGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTCGCTAGCTCCCCTGTTCCACCTCATTTGCTTCACCCTGCTCGTGCCAGTTCAGAACATTTCATGCCCTTTGTTCCCATGGCCACCTTGCAGCAGCACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCGCCCATCCGCAGCTCCAGCCTCCGTATCATCGGCAGGTCGGGCATTTCGGGTCGCCCCCGAATGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGGGCTCCAGTCCATAATTCAGTTCCTAATTACATTGATGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA	903	54.93	MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSGDLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGLVASSDPATDHLFASSPVPPHLLHPARASSEHFMPFVPMATLQQHHHHQQQMAAAAAVAAHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVHNSVPNYIDDLESANATGGRKVLTLFPTGDD	300

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	57695291	57697406	+	Hsped.04g05210.1	Hepe04g0521	567659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Hepe04g0521	300	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	103	154	IPR017930	-
	Hepe04g0521	300	Pfam	Myb-like DNA-binding domain	101	150	IPR001005	-
	Hepe04g0521	300	MobiDBLite	consensus disorder prediction	47	61	-	-
	Hepe04g0521	300	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	5	256	IPR044841	GO:0003700(InterPro)\|GO:0006355(InterPro)
	Hepe04g0521	300	Gene3D	-	95	157	-	-
	Hepe04g0521	300	MobiDBLite	consensus disorder prediction	1	93	-	-
	Hepe04g0521	300	MobiDBLite	consensus disorder prediction	1	18	-	-
	Hepe04g0521	300	FunFam	Two-component response regulator	94	157	-	-
	Hepe04g0521	300	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	99	151	IPR006447	GO:0003677(InterPro)
	Hepe04g0521	300	SUPERFAMILY	Homeodomain-like	95	155	IPR009057	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Hepe04g0521	Hepe-Chr4:57695291	Hepe10g1262	Hepe-Chr10:48112377	3.77e-42	dispersed
	Hepe04g0521	Hepe-Chr4:57695291	Hepe05g0644	Hepe-Chr5:10475095	1.34e-115	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	55366	PF00249	Myb_DNA-binding	2.20E-08	CL0123	Hepe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Hepe04g0521	-		-	-	0.0