Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0560 ATGGAGTTCTTACAGTCTTTGGATCCCCAAATCCTTCTGGGTTTGGCTGTGGCTGTTTCAGCCCTTGCTGTTGGTGCTCTCTATTTATTATCCTCGTCCAAGAAAAGCAAATCTAGAGGTTGCTTGGATCCAGAGATTTTCAAGGAGTTTAAACTTATCAAGCGTGTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAATCCTACTTCAGTTTTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGAAAAGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACGCCTATTACTTTGGATTGTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTCGGTGATTTTCTTCCAGTGAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGATGCTCGCCGGAGGCTCCGGCATTACTCCTATGTATCAAGTTGCTCGAGCGATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCTACGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACAAGGTACCCAGATAGCTTCAAGCTCCTTTATGTATTAAACCAGCCTCCTGAAGTGTGGGATGGCGGTGTCGGATTCGTATCGAAGGAGATGATTCAAACCCACTGCCCCGCTCCCGCTTCTGATGTTAAGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGAATATGAACCTGAGATGCTGTTCATGTTCTGA 846 45.63 MEFLQSLDPQILLGLAVAVSALAVGALYLLSSSKKSKSRGCLDPEIFKEFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDCDVGYFELVIKMYPQGRMSHHFRQMRVGDFLPVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLATRYPDSFKLLYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDVKILRCGPPPMNKAMAAHLEALEYEPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58436128 58443542 - Hsped.04g05600.1 Hepe04g0560 567698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0560 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Hepe04g0560 281 Gene3D Translation factors 40 140 - -
Hepe04g0560 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 20 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Hepe04g0560 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 278 IPR039261 -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Hepe04g0560 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Hepe04g0560 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Hepe04g0560 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Hepe04g0560 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Hepe04g0560 281 Gene3D - 141 281 IPR039261 -
Hepe04g0560 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Hepe04g0560 281 CDD cyt_b5_reduct_like 50 281 - -
Hepe04g0560 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g2552 Hepe-Chr8:67128104 Hepe04g0560 Hepe-Chr4:58436128 2.66e-63 transposed
Hepe04g0560 Hepe-Chr4:58436128 Hepe05g0611 Hepe-Chr5:9390462 1.86e-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0560 K00326 - csv:101212569 502.286