Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0589 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATTACAGTTCACGAAGACGTAGCACATCATCTGAAGAAATTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCTTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTTATCCGCCAGATGTTCGGAGCCAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACTAACCATGTGGAGCTCACTCCCAGCGATGCGGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCGAAAAACAGACCAATTGACTCCAAAGGGAAAAAGGGACATAAAGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCCCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGTTCGTACTGTAGGTTAATACTTTGCTGTAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGTTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGGCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCTTCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGAAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATAACACCAATGGATTGGGAGGAGTACATCTTTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGTCTGTTCCATGTTCGTGGGAAGTTATATGAGCTACTGGGTAATTGTATACCAGCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTTAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGCCTTGGACAGAAAGCCATCTTCCATATTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAGCGTTTGGCTAA 1065 42.63 MLWVDKYRPKTLDQITVHEDVAHHLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKKGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIGKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAITPMDWEEYIFEIASDIMKEQSPKSLFHVRGKLYELLGNCIPAEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISAFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 58817701 58823143 + Hsped.04g05890.1 Hepe04g0589 567727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0589 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Hepe04g0589 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 346 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Hepe04g0589 354 SMART AAA_5 33 192 IPR003593 GO:0016887(InterPro)
Hepe04g0589 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Hepe04g0589 354 Pfam Replication factor C subunit 3, C-terminal domain 253 342 - -
Hepe04g0589 354 Pfam DNA polymerase III, delta subunit 18 187 - -
Hepe04g0589 354 CDD AAA 35 181 - -
Hepe04g0589 354 Pfam RCF1/5-like, AAA+ ATPase lid domain 196 236 - -
Hepe04g0589 354 Gene3D - 190 250 - -
Hepe04g0589 354 FunFam Replication factor C subunit 3 252 345 - -
Hepe04g0589 354 Gene3D - 252 345 - -
Hepe04g0589 354 Gene3D - 1 189 IPR027417 -
Hepe04g0589 354 FunFam replication factor C subunit 3 190 248 - -
Hepe04g0589 354 FunFam Replication factor C subunit 5 1 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0589 K10756 - - csv:101221072 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0589 Hepe-Chr4:58817701 Hepe04g1525 Hepe-Chr4:70779746 8.60e-68 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0483 . 59 785 Core DNA Replication Machinery Family AT4G14700 66.1 2.2e-275 945.3
Hepe06g0483 . 93 785 Core DNA Replication Machinery Family AT4G12620 69.9 1.9e-282 968.8
Hepe10g0715 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.7 3.3e-143 505.0
Hepe01g0676 . 2 334 Core DNA Replication Machinery Family AT2G01120 65.3 5.8e-126 448.0
Hepe03g0562 . 3 535 Core DNA Replication Machinery Family AT4G29910 56.7 2.2e-168 589.3
Hepe01g0525 . 1 281 Core DNA Replication Machinery Family AT1G26840 66.0 4.0e-94 341.7
Hepe08g2041 . 5 803 Core DNA Replication Machinery Family AT1G79150 57.8 1.7e-241 832.8
Hepe02g0024 . 5 794 Core DNA Replication Machinery Family AT1G79150 57.5 5.9e-239 824.3
Hepe05g1030 . 1 939 Core DNA Replication Machinery Family AT1G44900 74.7 0.0e+00 1339.3
Hepe04g1984 . 1 575 Core DNA Replication Machinery Family AT5G46280 79.3 3.1e-263 904.4
Hepe02g0482 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.6 0.0e+00 1183.7
Hepe08g2481 . 1 737 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1099.3
Hepe07g2577 . 61 893 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1193.7
Hepe09g1860 . 62 894 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1171.4
Hepe04g2123 . 59 797 Core DNA Replication Machinery Family AT5G44635 60.4 1.2e-266 916.4
Hepe09g1857 . 18 543 Core DNA Replication Machinery Family AT5G44635 69.3 9.5e-200 694.1
Hepe09g1855 . 7 316 Core DNA Replication Machinery Family AT5G44635 71.9 5.9e-125 445.7
Hepe09g1861 . 3 270 Core DNA Replication Machinery Family AT5G44635 73.1 3.3e-112 403.3
Hepe03g1834 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1205.7
Hepe09g0663 . 40 509 Core DNA Replication Machinery Family AT2G29680 58.1 1.9e-155 546.2
Hepe09g0663 . 42 470 Core DNA Replication Machinery Family AT1G07270 58.0 4.3e-138 488.4
Hepe03g1305 . 252 844 Core DNA Replication Machinery Family AT3G25100 77.0 9.0e-258 886.3
Hepe05g0235 . 53 834 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.5
Hepe02g0733 . 16 636 Core DNA Replication Machinery Family AT2G14050 78.4 4.2e-285 977.2
Hepe08g0291 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.3 1.8e-116 416.4
Hepe01g1589 . 1 973 Core DNA Replication Machinery Family AT1G77320 51.0 2.7e-262 902.1
Hepe03g1610 . 1 192 Core DNA Replication Machinery Family AT1G80190 64.6 2.4e-69 258.8
Hepe07g0357 . 24 168 Core DNA Replication Machinery Family AT3G12530 73.8 1.8e-61 232.3
Hepe07g1096 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 8.8e-61 229.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 8.4e-69 256.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 8.4e-69 256.9
Hepe08g0190 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 2.8e-51 198.7
Hepe08g1181 . 1 1539 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1745.3
Hepe10g1540 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.0 2.3e-219 758.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe06g0251 . 3 445 Core DNA Replication Machinery Family AT5G41880 64.7 5.5e-175 610.9
Hepe04g1082 . 1 1086 Core DNA Replication Machinery Family AT5G63960 79.7 0.0e+00 1779.6
Hepe05g0526 . 1 437 Core DNA Replication Machinery Family AT2G42120 74.7 7.5e-201 696.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe08g0235 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.0 0.0e+00 2963.3
Hepe08g0235 . 9 2202 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2926.7
Hepe07g2561 . 13 288 Core DNA Replication Machinery Family AT5G22110 76.4 1.9e-128 456.4
Hepe07g2560 . 9 218 Core DNA Replication Machinery Family AT5G22110 56.7 1.1e-59 228.0
Hepe08g0185 . 1 925 Core DNA Replication Machinery Family AT5G22010 61.9 1.4e-305 1045.8
Hepe06g1212 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 7.2e-172 600.1
Hepe04g0589 . 1 354 Core DNA Replication Machinery Family AT5G27740 84.7 8.8e-176 613.2
Hepe02g2236 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 5.8e-154 540.8
Hepe08g2687 . 24 618 Core DNA Replication Machinery Family AT2G06510 68.1 1.0e-251 866.3
Hepe06g0960 . 34 702 Core DNA Replication Machinery Family AT2G06510 51.4 2.2e-198 689.1
Hepe09g0275 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 7.5e-244 840.1
Hepe06g0960 . 10 816 Core DNA Replication Machinery Family AT5G45400 51.9 5.3e-227 784.6
Hepe09g0275 . 1 618 Core DNA Replication Machinery Family AT5G61000 64.6 5.4e-237 817.4
Hepe06g0960 . 5 828 Core DNA Replication Machinery Family AT4G19130 52.6 1.5e-228 789.6
Hepe01g2077 . 1 267 Core DNA Replication Machinery Family AT2G24490 50.7 1.3e-70 263.5
Hepe09g1773 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.2 4.8e-189 657.5
Hepe05g1820 . 1 1112 Core DNA Replication Machinery Family AT1G08840 53.1 8.9e-301 1030.0
Hepe05g1236 . 9 171 Core DNA Replication Machinery Family AT2G25100 69.9 5.6e-61 231.5
Hepe08g0926 . 1 794 Core DNA Replication Machinery Family AT1G08130 66.7 7.9e-294 1006.5
Hepe08g0926 . 194 794 Core DNA Replication Machinery Family AT1G49250 68.4 3.8e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008861 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34