Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0644 ATGGCAGAAGTACTAGATCAAGTTGATCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTACAAATCATGAAAGATCCCGTCACGGTCGCCTCCGGCATAACCTATGACCGGGAAAACATCGAGAAATGGTTGTTTTCTGACAAACATAAGACGTGCCCTGTCACGCAGGTGGTCTTGTCGTCGGACTTTGATATCACTCCCAACCATACTCTACGGCGATTGATTCAAGCTTGGTGTATCGTCAACGCTCGCAGCGGCATCGAGAGGATTCCGACGCCGAAGCCTCCCGTCGACCAGAAGCAGGTCGTTAAGATTCTTGCCGATGCGAAGTTATCTCCGTTCTCTCAACAGAATTGTCTCCGACGACTTCGATCCATTGTGTCCGCAAATGAAACTAATAAACGTTGCATGGAAGCTGCTGGAGTTGTGGAGTTCTTGGTTGAAGTTGTGTGTAATTCCATCAATGTGGAATCGAGCTTTGAAGATTACGCGTTTGACGACCAGTTCACAAATTTGGGCGATGAGGCTTTGAGCATTCTTTACAAACTCCAAATCTCCGAATCCGGCCTCAAATTTCTACTCGGCGGCAACAATGGCGGCGGCGCCGCCGTCTTCGTCACAACCCTAACCAAAATCCTGCAGAACGGCACCTACGGTTCTCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGATCCAGATCCTCAGCCTAACCGCCGAATTCTTCATCGAAATCGTCCAAATTCTCAAGGATCAGATCTCCAAACAGGCTTCGAAATCGGCGTTGAAATTGCTGATCGGACTCTGTTCGAGCTCCAGAAACAGAGTCAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCCTCCGAGAAGCGTTTGTGCGAGATGAATCTCGTGGCGCTAGATCTTCTCTGCGGATGTGCCGACGGTAGGGCGGAGCTGTTGAATCACGCGGCGGGGCTCGCCGTCGTGTCGAAGAAGATTCTTAGAGTTTCGACGCTCGGAAGTGAGAAGGCCGTCGGAATTTTGTGCTCCGTCGCGAGATTCTCGGCGAGTCAAGCCGTGGTTCAGGAAATGGTGGGGCTTGGAGTTGTGACAAAGCTCTGTTTTCTGCTTCAAATCGTCGGCGCCGGAGGTAAAGCGAAAGAGAAAGCTAGAGAGATTTTGAAGCTCCATGGGCGGACATGGCGGAATTCTTCGTGTTTGCCTTCGAGTTTGCGATCTTCTTTTCCACTTTAG 1281 50.35 MAEVLDQVDPPPFFLCPISLQIMKDPVTVASGITYDRENIEKWLFSDKHKTCPVTQVVLSSDFDITPNHTLRRLIQAWCIVNARSGIERIPTPKPPVDQKQVVKILADAKLSPFSQQNCLRRLRSIVSANETNKRCMEAAGVVEFLVEVVCNSINVESSFEDYAFDDQFTNLGDEALSILYKLQISESGLKFLLGGNNGGGAAVFVTTLTKILQNGTYGSRAYSIMLLNSMFEVADQIQILSLTAEFFIEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMNLVALDLLCGCADGRAELLNHAAGLAVVSKKILRVSTLGSEKAVGILCSVARFSASQAVVQEMVGLGVVTKLCFLLQIVGAGGKAKEKAREILKLHGRTWRNSSCLPSSLRSSFPL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 59663734 59666051 - Hsped.04g06440.1 Hepe04g0644 567782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0644 426 CDD RING-Ubox_PUB 11 62 IPR045210 -
Hepe04g0644 426 Pfam U-box domain 11 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0644 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Hepe04g0644 426 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0644 426 PANTHER WDSAM1 PROTEIN 8 419 IPR045185 GO:0061630(InterPro)
Hepe04g0644 426 SUPERFAMILY ARM repeat 102 386 IPR016024 -
Hepe04g0644 426 SMART Ubox_2 13 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0644 426 SUPERFAMILY RING/U-box 7 86 - -
Hepe04g0644 426 Gene3D - 99 407 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0644 Hepe-Chr4:59663734 Hepe05g0444 Hepe-Chr5:5769797 7.51e-146 dispersed
Hepe02g1008 Hepe-Chr2:12384485 Hepe04g0644 Hepe-Chr4:59663734 9.92e-53 transposed
Hepe05g1830 Hepe-Chr5:68632657 Hepe04g0644 Hepe-Chr4:59663734 7.86e-68 transposed
Hepe04g0644 Hepe-Chr4:59663734 Hepe04g1125 Hepe-Chr4:66242902 8.01e-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0644 - - - 0.0