Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0646 ATGGCTACCTACGCTTTGCTCGGCGACTCCACCACCACCCGCGTTAATGGCGCTTTCGATGATTCTCCGTTAACCACCGACAGCACCGACGAACATAATCGACAGATTCTTCAAGTTCAGCTTTCTCAACGGTTACCGCCTGCTGGGAAAATGGTGCGGAAGAGAATCGCCTCGGAAATTGAGATTGAAGGTCTCGACGGCGGCGGTGGCGGCGGTGGTGGTGGAGCTACAGCTGCTGTTCATCCTCGGCTTTGCCGGCGTAGTTTAGCTTCCGATCGTCCATTTACAGGAGGTGATAGTAATAATAATAATAATAAAGGGAATGTGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGGTGCTAACCACTCCACTGTGCATAATCTAACTGCTCTGACGTCAGTTGTAATCGAAGGGTCTAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACAGCTTCTTCCACTACTTCCAACAACAATAACTCTTCTCTTCTTCGTCCTCAGCCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTCTCTGGTTTGCCTTTGTTTCCACCGGAATCGAATCATCTTCTTCACAACAAGTTAAATACTCGCAATAATCATTTTCCTCTTCCGAATTCATCTCAGGTTGTTCTTCATAATCCTCCGACTTCTGCAACTGCCTCCATTATCGCTGCTGCGCCTTCTCCGATGGATGATTCCTCCGCTACCGCTTGGATCGACGGTATCATTAAGGATTTAATCCATAGTTCTACGGCTATTTCCATTCCTCAGCTTATTCAGAACGTTCGTGAGATTATCTACCCTTGTAACCCCAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGCGTTCCTAACTTCGCCGCGGAGGATCATCGAGTGAGGAAATCTGGGTTGGGGTTGCAGCAGAGGCAGTTCAATCAAGAGCAGCAGCAGGAGCAAGAACAGGATTGTTCTGGTTTAAAGCTTAATCTCGATTCTTCTTCTCTCCATAATCTTCCGAATTTCCCCTCTCAGCCACCGTTTCATGAGTCGTATCTTCACTGGGGAGCCACCCCTCCACCAGTCCCCACTCCGTCCGCCGCCGTCTCAGGCGGCGGCGGTGGTGGCGAGGTTTCCGGTCATCATCAACTTAATCTCTCTTCTGTTACTCAGGCGTCACTCGTTCCTCTAAACCATATCTCTTCAAAGCCACAATCAGAACAGCAAAACTCCTGTTCAGTCAATGTGAAAGCGGTGGCGGCGGTGGCGCAGTCACCGCTCCCGACCCCTCCTCCGCCGCCGACGAGTAATAACCCTTCAACGACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCAGTTTCTGCTGATAATTTAGAAGAAGCCAACAAAATGCTGTTGGAAATCTCTGAGTTATCGACGCCCTTCGGCACATCGGCGCAGCGGGTGGCGGCGTATTTCTCCGAAGCGATGTCGGCGAGGCTTGTGAGCTCTTGTTTAGGGATATATGCAGCTCTGCCGCCGTCGTTGGTGCCACACATGCACAGCCAGAAGATAGCCTCAGCCTTTCAGGTCTTCAATGGCATTAGCCCATTTGTGAAATTCTCACACTTCACTGCCAATCAAGCCATTCAAGAAGCTTTTGAAAGGGAAGAGAGAGTTCACATTATAGATCTGGACATCATGCAAGGCCTTCAATGGCCTGGCCTCTTCCACATCTTGGCGTCTCGGCCAGGCGGGCCGCCGTACGTCCGCCTCACCGGGCTGGGGACCTCTCAGGAGGTTCTTGATGCCACTGGCAAACGGCTCACTGAATTTGCTGAGAAGCTTGGCCTTCCGTTTGATTTCTTTCCTGTGGCTGATAAAATTGGCAATTTGGACTTGGAGAGGCTTAATGTGAGCAAAAGGGAAGCTGTTGCCGTCCATTGGATGCAGCATTCTCTTTATGAAGTTACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAGAGATTGGCTCCAAAAGTGGTGACGGTGGTCGAACAAGACCTGAGCCACACAGGCTCCTTCTTGGGGAGATTCGTAGAGGCCATTCACTACTATTCAGCACTGTTCGACTCATTGGGTGTCAGCTACGGCGAAGAGAGTGAAGAAAGGCACTTAGTGGAACAGCAACTCTTGTCGAGGGAGATCAGAAACGTGCTCGCCGTCGGCGGCCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAGGGCATTTCTCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGCTATACGCTTGTAGAAGATAATGGGACTCTGAAACTTGGGTGGAAGGATCTTTGCTTGCTCACGGCCTCGGCTTGGAAGCCGCCGTTTCATCACCATGCTGCGGCGGCGGCCGCCACCAACAACCACATTCCCCGGTACTGA 2559 50.45 MATYALLGDSTTTRVNGAFDDSPLTTDSTDEHNRQILQVQLSQRLPPAGKMVRKRIASEIEIEGLDGGGGGGGGGATAAVHPRLCRRSLASDRPFTGGDSNNNNNKGNVNYCSSSNPSHGGANHSTVHNLTALTSVVIEGSNLSNPPSGSDATASSTTSNNNNSSLLRPQPHHHHLQNPAVCGFSGLPLFPPESNHLLHNKLNTRNNHFPLPNSSQVVLHNPPTSATASIIAAAPSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFAAEDHRVRKSGLGLQQRQFNQEQQQEQEQDCSGLKLNLDSSSLHNLPNFPSQPPFHESYLHWGATPPPVPTPSAAVSGGGGGGEVSGHHQLNLSSVTQASLVPLNHISSKPQSEQQNSCSVNVKAVAAVAQSPLPTPPPPPTSNNPSTTALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHMHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLDATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFHHHAAAAAATNNHIPRY 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 59714816 59718512 - Hsped.04g06460.1 Hepe04g0646 567784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0646 852 MobiDBLite consensus disorder prediction 140 171 - -
Hepe04g0646 852 ProSiteProfiles GRAS family profile. 463 832 IPR005202 -
Hepe04g0646 852 MobiDBLite consensus disorder prediction 140 178 - -
Hepe04g0646 852 Pfam GRAS domain family 473 832 IPR005202 -
Hepe04g0646 852 MobiDBLite consensus disorder prediction 370 389 - -
Hepe04g0646 852 MobiDBLite consensus disorder prediction 94 125 - -
Hepe04g0646 852 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 450 831 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Hepe04g0646 852 MobiDBLite consensus disorder prediction 90 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0646 Hepe-Chr4:59714816 Hepe06g1230 Hepe-Chr6:62029764 6.85e-59 dispersed
Hepe02g0993 Hepe-Chr2:12105253 Hepe04g0646 Hepe-Chr4:59714816 3.44e-61 transposed
Hepe02g2393 Hepe-Chr2:69235915 Hepe04g0646 Hepe-Chr4:59714816 3.58e-65 transposed
Hepe02g2646 Hepe-Chr2:73957125 Hepe04g0646 Hepe-Chr4:59714816 1.39e-66 transposed
Hepe02g3414 Hepe-Chr2:83558646 Hepe04g0646 Hepe-Chr4:59714816 4.11e-95 transposed
Hepe03g2122 Hepe-Chr3:79291216 Hepe04g0646 Hepe-Chr4:59714816 1.01e-104 transposed
Hepe04g0380 Hepe-Chr4:52416659 Hepe04g0646 Hepe-Chr4:59714816 4.67e-49 transposed
Hepe06g1220 Hepe-Chr6:61818709 Hepe04g0646 Hepe-Chr4:59714816 2.54e-37 transposed
Hepe07g0886 Hepe-Chr7:11434288 Hepe04g0646 Hepe-Chr4:59714816 2.87e-157 transposed
Hepe09g0079 Hepe-Chr9:671424 Hepe04g0646 Hepe-Chr4:59714816 1.15e-50 transposed
Hepe04g0646 Hepe-Chr4:59714816 Hepe04g1128 Hepe-Chr4:66307782 1.91e-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55372 PF03514 GRAS 2.10E-126 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0646 K27742 - csv:101205286 1285.78