Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0661 ATGGAGGCGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGATTGTTATCTGCCTCGAATATAATTCAGGCTCCGCTTTCCGCACTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAGGAATCCGAGGCATTGATAAGTGCACGACTGCCTTCGGGGTTTCGGGGTCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACCAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTCAGCGGTCAGAATGCAGTGTCTTTGCAATCTGTTTCCGCGTCAGAGCTTAGCCAGGGAGATCCTGCTACTGAACGCGGTGCAAGAGAGGGAATTCCTCAATCGACAAATGCAGGTGCTGATGGAGATGCCTCGGATGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACCATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCTCCCAAAGCAATACCTCCATTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGCTCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTTGAATATCTGCTACTACTGTACCGTGCCCTGTTGCCTACTCCCGTCTGGTATCGGTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGGTCTCTCATGTCTGTTATCTCCCTTCCCCGTCTTGTATTTCTTTCCGACCTGGATTTCAGGTGCAATCCTTCATTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCAGCTGGGGATTTGTGTGCTATTTGTCAAGAGAAGATGCATGCTCCTATCCTTCTACGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGTCCATTGTGCAGGGCTTTGGTTAAACCTGCAGATCTCAGGTCATTTGGCGATGGATCAACAAGTCTGTTTTTCCAAGTTTTCTAA 1458 46.02 MEASGSDPDSHRAASTSGSSRRFGLLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRGHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSASELSQGDPATERGAREGIPQSTNAGADGDASDAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPKAIPPFWHAIFIIMVNDTLVRQAVMVLKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVVSHVCYLPSPSCISFRPGFQVQSFIAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60008552 60025358 - Hsped.04g06610.1 Hepe04g0661 567799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0661 485 SMART ring_2 424 461 IPR001841 -
Hepe04g0661 485 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 9 485 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Hepe04g0661 485 MobiDBLite consensus disorder prediction 1 20 - -
Hepe04g0661 485 MobiDBLite consensus disorder prediction 123 168 - -
Hepe04g0661 485 SUPERFAMILY RING/U-box 419 467 - -
Hepe04g0661 485 ProSitePatterns Zinc finger RING-type signature. 439 448 IPR017907 -
Hepe04g0661 485 ProSiteProfiles Zinc finger RING-type profile. 424 462 IPR001841 -
Hepe04g0661 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 472 IPR013083 -
Hepe04g0661 485 CDD RING-HC_RNFT1-like 422 462 - -
Hepe04g0661 485 Pfam Ring finger domain 423 462 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0626 Hepe-Chr1:68078508 Hepe04g0661 Hepe-Chr4:60008552 1.15e-190 dispersed
Hepe04g0661 Hepe-Chr4:60008552 Hepe06g1524 Hepe-Chr6:65926316 1.23e-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0661 - - - 0.0