Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0661 ATGGAGGCGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGATTGTTATCTGCCTCGAATATAATTCAGGCTCCGCTTTCCGCACTGTTAGAGTATTCGGGTCTTCTTCGTGGCCGCCCAAGTCATCAGGAATCCGAGGCATTGATAAGTGCACGACTGCCTTCGGGGTTTCGGGGTCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACCAACGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTCAGCGGTCAGAATGCAGTGTCTTTGCAATCTGTTTCCGCGTCAGAGCTTAGCCAGGGAGATCCTGCTACTGAACGCGGTGCAAGAGAGGGAATTCCTCAATCGACAAATGCAGGTGCTGATGGAGATGCCTCGGATGCAGCTGGGGGAAATAGCAGGGATTCTTCTTACCAAAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACCATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGCTTCCTCCCAAAGCAATACCTCCATTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGCTCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTTGAATATCTGCTACTACTGTACCGTGCCCTGTTGCCTACTCCCGTCTGGTATCGGTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGGTCTCTCATGTCTGTTATCTCCCTTCCCCGTCTTGTATTTCTTTCCGACCTGGATTTCAGGTGCAATCCTTCATTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGTGCAGCTGGGGATTTGTGTGCTATTTGTCAAGAGAAGATGCATGCTCCTATCCTTCTACGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGTCCATTGTGCAGGGCTTTGGTTAAACCTGCAGATCTCAGGTCATTTGGCGATGGATCAACAAGTCTGTTTTTCCAAGTTTTCTAA 1458 46.02 MEASGSDPDSHRAASTSGSSRRFGLLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRGHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSASELSQGDPATERGAREGIPQSTNAGADGDASDAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPKAIPPFWHAIFIIMVNDTLVRQAVMVLKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVVSHVCYLPSPSCISFRPGFQVQSFIAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60008552 60025358 - Hsped.04g06610.1 Hepe04g0661 567799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0661 485 SMART ring_2 424 461 IPR001841 -
Hepe04g0661 485 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 9 485 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Hepe04g0661 485 MobiDBLite consensus disorder prediction 1 20 - -
Hepe04g0661 485 MobiDBLite consensus disorder prediction 123 168 - -
Hepe04g0661 485 SUPERFAMILY RING/U-box 419 467 - -
Hepe04g0661 485 ProSitePatterns Zinc finger RING-type signature. 439 448 IPR017907 -
Hepe04g0661 485 ProSiteProfiles Zinc finger RING-type profile. 424 462 IPR001841 -
Hepe04g0661 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 472 IPR013083 -
Hepe04g0661 485 CDD RING-HC_RNFT1-like 422 462 - -
Hepe04g0661 485 Pfam Ring finger domain 423 462 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0661 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0626 Hepe-Chr1:68078508 Hepe04g0661 Hepe-Chr4:60008552 1.15e-190 dispersed
Hepe04g0661 Hepe-Chr4:60008552 Hepe06g1524 Hepe-Chr6:65926316 1.23e-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g33 Blo01g01024 . Bda01g00074 . . . . . . . Cma03g00274 Cma07g01198 Car03g00234 Car07g01160 Sed14g0548 . . Bhi03g02255 Tan03g0676 Cmetu08g0660 . Hepe04g0661 . . Cla04g00624 Cam04g0617 Cec04g0740 Cco04g0788 Clacu04g0666 Cmu04g0666 Cre04g0718 . . . Cone19ag1461 . Csa04g01716 Chy08g00549 . . . . . . Bpe02g00942 . . . Cmo03g00286 Cmo07g01242 . . . . . Cpe19g00170 . . . . . . . . . . . . . . . . . Cme08g02066
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1932 . 85 571 C3H Transcription Factor Family AT2G31510 77.5 2.0e-234 808.5
Hepe08g1843 . 85 571 C3H Transcription Factor Family AT2G31510 77.3 5.7e-234 807.0
Hepe03g1020 . 73 561 C3H Transcription Factor Family AT2G31510 75.7 5.6e-229 790.4
Hepe03g1020 . 9 518 C3H Transcription Factor Family AT2G31770 57.0 1.1e-172 603.6
Hepe08g1843 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe08g1932 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe03g1020 . 56 525 C3H Transcription Factor Family AT2G31760 58.9 2.7e-170 595.5
Hepe08g1843 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe08g1932 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe04g1077 . 8 170 C3H Transcription Factor Family AT5G06490 51.4 2.0e-44 176.0
Hepe04g1077 . 8 170 C3H Transcription Factor Family AT5G06490 51.4 2.0e-44 176.0
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT3G02290 61.9 5.3e-73 271.2
Hepe09g0688 . 1 307 C3H Transcription Factor Family AT1G11020 77.2 1.9e-137 485.7
Hepe02g1605 . 59 218 C3H Transcription Factor Family AT1G50440 75.0 1.5e-67 253.1
Hepe04g0085 . 8 361 C3H Transcription Factor Family AT5G08750 61.1 2.4e-120 429.1
Hepe07g0323 . 1 532 C3H Transcription Factor Family AT3G16090 62.6 9.0e-171 597.0
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT5G38895 56.7 1.6e-70 263.5
Hepe10g0677 . 16 227 C3H Transcription Factor Family AT1G19310 66.5 1.7e-79 292.7
Hepe04g1181 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Hepe04g1468 . 9 323 C3H Transcription Factor Family AT2G22120 83.3 2.0e-159 558.9
Hepe10g0546 . 34 164 C3H Transcription Factor Family AT5G07040 59.7 2.9e-41 165.2
Hepe05g0814 . 1 166 C3H Transcription Factor Family AT5G07040 59.0 7.0e-40 160.6
Hepe09g0326 . 1 389 C3H Transcription Factor Family AT1G18470 76.6 4.1e-180 627.9
Hepe02g2731 . 12 389 C3H Transcription Factor Family AT1G18470 62.7 5.1e-138 488.0
Hepe04g1732 . 9 207 C3H Transcription Factor Family AT4G22250 51.2 6.3e-44 174.5
Hepe02g2686 . 64 292 C3H Transcription Factor Family AT1G68200 50.8 2.9e-50 196.1
Hepe03g1020 . 9 518 C3H Transcription Factor Family AT2G31770 57.0 1.1e-172 603.6
Hepe08g1843 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe08g1932 . 54 545 C3H Transcription Factor Family AT2G31770 57.3 2.0e-171 599.4
Hepe03g1020 . 56 525 C3H Transcription Factor Family AT2G31760 58.9 2.7e-170 595.5
Hepe08g1843 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe08g1932 . 68 530 C3H Transcription Factor Family AT2G31760 59.1 2.7e-170 595.5
Hepe06g1964 . 2 347 C3H Transcription Factor Family AT2G30580 50.9 3.0e-80 295.8
Hepe10g1904 . 46 275 C3H Transcription Factor Family AT5G55970 69.7 1.8e-95 346.3
Hepe04g0085 . 8 361 C3H Transcription Factor Family AT5G63780 57.2 6.4e-113 404.4
Hepe05g0517 . 1 424 C3H Transcription Factor Family AT3G58030 55.1 9.3e-111 397.5
Hepe10g1904 . 48 341 C3H Transcription Factor Family AT4G26580 64.5 2.5e-111 399.1
Hepe04g0661 . 1 485 C3H Transcription Factor Family AT5G01960 68.1 4.3e-169 591.3
Hepe01g0626 . 25 495 C3H Transcription Factor Family AT5G01960 59.3 9.0e-151 530.4
Hepe08g0373 . 1 151 C3H Transcription Factor Family AT2G04240 58.6 4.1e-43 171.4
Hepe02g0325 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 9.3e-40 160.2
Hepe07g0859 . 132 567 C3H Transcription Factor Family AT5G45290 51.1 1.5e-94 344.0
Hepe08g0155 . 37 243 C3H Transcription Factor Family AT5G12310 62.0 8.5e-56 214.2
Hepe09g0426 . 71 381 C3H Transcription Factor Family AT5G05810 50.7 1.7e-74 276.9
Hepe02g3339 . 32 210 C3H Transcription Factor Family AT5G05830 63.7 5.1e-59 224.6
Hepe05g0126 . 70 232 C3H Transcription Factor Family AT5G05830 63.2 1.1e-56 216.9
Hepe04g0791 . 19 148 C3H Transcription Factor Family AT5G05830 62.6 5.6e-42 167.9
Hepe09g0787 . 32 416 C3H Transcription Factor Family AT4G28890 51.7 2.6e-97 352.8
Hepe02g3218 . 1 223 C3H Transcription Factor Family AT5G15790 59.0 1.7e-71 266.2
Hepe02g3366 . 58 330 C3H Transcription Factor Family AT3G55530 79.3 5.3e-112 401.0
Hepe03g1971 . 1 272 C3H Transcription Factor Family AT1G63900 75.5 1.4e-115 412.9
Hepe05g1819 . 10 391 C3H Transcription Factor Family AT2G44580 53.3 2.8e-119 425.6
Hepe10g0677 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 2.1e-40 162.2
Hepe01g1934 . 3 314 C3H Transcription Factor Family AT5G20910 62.5 6.9e-108 387.5
Hepe07g0323 . 119 532 C3H Transcription Factor Family AT1G65040 55.0 1.1e-108 390.2
Hepe04g1181 . 17 227 C3H Transcription Factor Family AT2G23780 63.0 1.1e-75 280.0
Hepe10g0677 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 2.7e-69 258.8
Hepe05g0673 . 1 308 C3H Transcription Factor Family AT3G10810 55.9 1.8e-78 290.4
Hepe06g1524 . 1 165 C3H Transcription Factor Family AT1G63840 58.3 2.4e-46 182.2
Hepe03g0577 . 1 149 C3H Transcription Factor Family AT1G63840 51.3 1.9e-40 162.5
Hepe02g2619 . 17 350 C3H Transcription Factor Family AT1G68070 64.5 4.0e-117 418.3
Hepe01g2358 . 4 178 C3H Transcription Factor Family AT1G76410 56.7 1.3e-50 196.4
Hepe06g0855 . 6 180 C3H Transcription Factor Family AT1G76410 54.7 8.1e-48 187.2
Hepe10g0296 . 1 403 C3H Transcription Factor Family AT1G80400 53.6 4.6e-112 401.7
Hepe06g0855 . 18 174 C3H Transcription Factor Family AT2G17450 54.2 4.1e-39 158.3
Hepe08g1932 . 85 571 C3H Transcription Factor Family AT2G31510 77.5 2.0e-234 808.5
Hepe08g1843 . 85 571 C3H Transcription Factor Family AT2G31510 77.3 5.7e-234 807.0
Hepe03g1020 . 73 561 C3H Transcription Factor Family AT2G31510 75.7 5.6e-229 790.4
Hepe04g1077 . 7 169 C3H Transcription Factor Family AT2G35910 58.2 3.5e-50 195.3
Hepe05g0457 . 6 164 C3H Transcription Factor Family AT2G35910 53.4 1.1e-43 173.7
Hepe04g0245 . 1 307 C3H Transcription Factor Family AT2G41980 82.1 6.9e-153 537.0
Hepe08g0073 . 27 323 C3H Transcription Factor Family AT2G41980 72.2 5.3e-129 457.6
Hepe07g0062 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 5.9e-128 454.1
Hepe02g2500 . 49 306 C3H Transcription Factor Family AT2G41980 78.7 7.2e-126 447.2
Hepe01g0991 . 49 306 C3H Transcription Factor Family AT2G41980 79.5 2.1e-125 445.7
Hepe03g0666 . 44 302 C3H Transcription Factor Family AT2G41980 75.7 2.6e-123 438.7
Hepe07g0063 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.0e-117 417.2
Hepe05g1522 . 117 391 C3H Transcription Factor Family AT3G06140 62.7 3.5e-95 345.5
Hepe05g0254 . 33 330 C3H Transcription Factor Family AT3G09770 56.7 5.8e-84 308.1
Hepe02g1648 . 130 674 C3H Transcription Factor Family AT3G26730 53.9 7.6e-158 554.7
Hepe09g0195 . 93 389 C3H Transcription Factor Family AT3G47990 71.0 1.6e-125 446.0
Hepe07g2232 . 23 309 C3H Transcription Factor Family AT3G47990 71.6 1.5e-120 429.5
Hepe01g2358 . 4 185 C3H Transcription Factor Family AT1G20823 56.7 7.6e-52 200.7
Hepe06g0855 . 13 170 C3H Transcription Factor Family AT1G20823 58.6 8.7e-48 187.2
Hepe08g1045 . 35 406 C3H Transcription Factor Family AT3G18930 53.4 4.5e-83 305.4
Hepe06g0897 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.2e-75 278.5
Hepe05g0126 . 9 232 C3H Transcription Factor Family AT2G37950 50.9 4.5e-47 184.9
Hepe05g0212 . 52 320 C3H Transcription Factor Family AT5G02750 52.3 1.8e-67 253.1
Hepe09g0326 . 5 467 C3H Transcription Factor Family AT1G73950 73.0 1.2e-198 689.5
Hepe02g2731 . 12 467 C3H Transcription Factor Family AT1G73950 58.6 1.8e-154 542.7
Hepe06g0242 . 1 158 C3H Transcription Factor Family AT1G33480 56.3 1.2e-44 177.2
Hepe02g2619 . 7 251 C3H Transcription Factor Family AT2G01735 58.9 5.3e-74 274.6
Hepe06g1213 . 60 270 C3H Transcription Factor Family AT2G01735 53.1 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001607 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 2 2 71