Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0667 ATGCCGATGAGGAGGGCTCGTGTGTGCGTTTTTCTGCTGTTGTGTTGCTGTTCCTTGCTTCTTTCTGGTGCTGCAATCACAGAGCCATCTGATGTTGAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTATGGTCCATCTTAAAAATTGGAATGAGGGAGATCCTTGCACAACTAATTGGACTGGAGTAGTATGCAGCTATTCCGATGGAGCTGTTGGGAACTTACGTGTCAAAGAACTCCAGCTATTGAATATGAACCTATCTGGAAACATAGCCCCTGAGATCAGCCAATTGTCCCAGCTTGAGAAGTTAGATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAAGAGATTGGCAGTATTAGGCCGCTGAGACTTTTACTCTTAAATGGAAATAAACTCTCTGGTCCTCTTCCTGATGAGCTTGGTAATCTTACAAATCTCAACCGATTCCAAATAGACGAGAATCAAATTTCAGGGAATATCCCAAAATCATATGCTAACTTGATCAGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAGCCTTCTTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCTTTGCCACTAGAATTTTCGACCTTGCCAATACTACGCATTCTGCAACTTGATAACAACAACTTCGAAGGTGAAATTCCAGCATCTTATGAAAATATTTCTACATTAGTGAAATTAAGTCTGAGGAATTGCAGCTTGGAGGGACCGATTTTTAATTTTAGCAAGATTGCAAACCTCAGTTACTTGGATCTTAGCTGGAATCATTTTACTGGACCCATACCGCCATATAACCTCTCTTCTAAAGTGACAACAATAATTTTGTCGCACAACCAGCTGAATGGATCTATACCCAACAGTTTCTCTAATCTTCCTGTCCTCCAGAAACTGTCACTGGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCTCTGTGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACACTCGATCTTCGGAACAATTCGTTTTCTGGCATTTCCGGAAGCACAAACCCTCCAGCTAATGTCACTCTAAGGCTTGAAGGAAATCCAATCTGCCAAAATTTAAGAGGACAAAACTCTAACCTGTTCTGTGCATCTAAAATTGTAGAAGATGGGCTGCCTAGAAGCTCAAGGAACTTCAATGAAACATGTCCGGTTAGAGGTTGTCCAACAGATAGTTTTTTTGAATATGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTAAAAAGTCCAAGTTTTTCCTACTTTCCTCCATACATATATTTATTTCAAGCGTATCTGACAAAGGAACTCAGTTTGGATAAGCACCAATTGTTAATCGATTCATACGATTGGGAAGGATCTCGCCTGAGGATGTATCTGAAGATTTTCCCATTATTTGATAGTGGTACTCATATGTTGGATAAAAGAGAGGTATTTCTAATTACAGAAAAATTTATGTCATGGAATTTTACTCGTGATGACTTGCTCGGCCCATATGAGCTTCTCAACTTCACACTCCCTGGCCATTTTCAGACTGTCATTTTCCAGACAGAGAAGATGGGCATTGGTGCGGGTATCTTGGCTGCCATTATAGTTGGATCTGTTGCTTGTATTCTTTTTATCGTTGCAGTAACCATATTTCTGTTCACTAGGCGTTCCAGCGACCGTCACATTTCGTCGAGGAAAAACTTTTCGACTAAGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCGTTTAAGGAAATGCAATTGGCTACTGGAAGTTTTAACCGCTCTACTCAAGTTGGCCAAGGAGGTTATGGCAAGGTCTATAAAGGCATATTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCCTTACAAGGCCAAAAAGAATTTTTGACCGAGATAGAACTCTTGTCACGATTACATCACCGAAACTTAGTTTCCCTGATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCAAATGGAACTTTGCGGGACTGGATTTCTGGTTTTGAATTTTCTGCAGCCAAAGCCAAAACTACAGTAAACCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGTATATTGTATCTCCATACTGAAGCAAATCCTCCTATATATCACCGAGACATCAAAGCTACAAACATACTCCTCGATGCCAAGCTCACTGCCAAAGTGGCTGATTTCGGATTGTCACGTCTTGCCCCTGATCTAAATTATGAAGGGGACGTTCCTGGATATATATCTACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAATACTTTTTAACTCATAAATTGACAGACAAAAGTGATGTCTATAGCCTTGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCGATTTCACACGGCAAAAACATTGTCCGTGAGGTAAAATTGGCACATCAAATGGGAACGATTCTTTCAATTGTAGACACCAGGTTGGGTTCTTTCCCATCGGAGTGTTTAGAGAGGTTTGTTGCTTTGGCCCTCAGTTGTTGCCATGACAAGCCAGAAGAGCGGCCGTCCATGCTCGTTGTGGTGAGGGAGCTGGAGAACATACTGTGCATGATGCCTGATGATAGCGGCGCCTTGTCTTTGGACTTGTCCCTGAGATCAAGTGCCAGACTTCCATCCTCACCAACGTCGACGCCCAGCATCTCCCGAGACCATTTTGCATCGGGAAGCATTTCGGGGAGCGATCTCCTCAGTGGCATTGTGCCAACCATCAGACCTCGCTAA 2880 42.19 MPMRRARVCVFLLLCCCSLLLSGAAITEPSDVEALLAVKRSLIDPMVHLKNWNEGDPCTTNWTGVVCSYSDGAVGNLRVKELQLLNMNLSGNIAPEISQLSQLEKLDFMWNNLTGSIPKEIGSIRPLRLLLLNGNKLSGPLPDELGNLTNLNRFQIDENQISGNIPKSYANLISVKHLHFNNNTLSGEIPSELSKLPSLLHLLLDNNNLSGSLPLEFSTLPILRILQLDNNNFEGEIPASYENISTLVKLSLRNCSLEGPIFNFSKIANLSYLDLSWNHFTGPIPPYNLSSKVTTIILSHNQLNGSIPNSFSNLPVLQKLSLENNFLNGSVPSALWEKMSFNSSARLTLDLRNNSFSGISGSTNPPANVTLRLEGNPICQNLRGQNSNLFCASKIVEDGLPRSSRNFNETCPVRGCPTDSFFEYVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYIYLFQAYLTKELSLDKHQLLIDSYDWEGSRLRMYLKIFPLFDSGTHMLDKREVFLITEKFMSWNFTRDDLLGPYELLNFTLPGHFQTVIFQTEKMGIGAGILAAIIVGSVACILFIVAVTIFLFTRRSSDRHISSRKNFSTKIGLKIDGVKAFSFKEMQLATGSFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWISGFEFSAAKAKTTVNLNFRMRLQIALGSAKGILYLHTEANPPIYHRDIKATNILLDAKLTAKVADFGLSRLAPDLNYEGDVPGYISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTILSIVDTRLGSFPSECLERFVALALSCCHDKPEERPSMLVVVRELENILCMMPDDSGALSLDLSLRSSARLPSSPTSTPSISRDHFASGSISGSDLLSGIVPTIRPR 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60103329 60115566 - Hsped.04g06670.1 Hepe04g0667 567805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0667 959 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Hepe04g0667 959 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
Hepe04g0667 959 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
Hepe04g0667 959 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Hepe04g0667 959 Pfam Leucine Rich Repeat 269 286 IPR001611 GO:0005515(InterPro)
Hepe04g0667 959 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515(InterPro)
Hepe04g0667 959 SUPERFAMILY L domain-like 27 286 - -
Hepe04g0667 959 FunFam Leucine-rich repeat protein kinase family protein 583 695 - -
Hepe04g0667 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0667 959 CDD STKc_IRAK 626 900 - -
Hepe04g0667 959 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Hepe04g0667 959 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524(InterPro)
Hepe04g0667 959 Gene3D Ribonuclease Inhibitor 288 397 IPR032675 -
Hepe04g0667 959 Gene3D Transferase(Phosphotransferase) domain 1 696 908 - -
Hepe04g0667 959 Pfam Protein kinase domain 621 893 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0667 959 PANTHER RECEPTOR-LIKE PROTEIN 55 44 898 - -
Hepe04g0667 959 ProSiteProfiles Protein kinase domain profile. 620 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0667 959 Gene3D Ribonuclease Inhibitor 27 287 IPR032675 -
Hepe04g0667 959 Gene3D Phosphorylase Kinase; domain 1 591 695 - -
Hepe04g0667 959 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 912 - -
Hepe04g0667 959 SMART serkin_6 620 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0667 959 SUPERFAMILY Protein kinase-like (PK-like) 606 904 IPR011009 -
Hepe04g0667 959 SUPERFAMILY L domain-like 244 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0667 Hepe-Chr4:60103329 Hepe10g1396 Hepe-Chr10:50345697 8.52e-182 dispersed
Hepe06g0454 Hepe-Chr6:25319902 Hepe04g0667 Hepe-Chr4:60103329 1.39e-24 dispersed
Hepe04g0667 Hepe-Chr4:60103329 Hepe04g0676 Hepe-Chr4:60241003 5.17e-65 proximal
Hepe02g3246 Hepe-Chr2:82026244 Hepe04g0667 Hepe-Chr4:60103329 1.52e-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72715 PF00069 Pkinase 6.80E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0667 - - - 0.0