Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0691 ATGGCGGTTTCTCCCGATTCTTTTCCACCGAGGAAGCGCCGTCCGTCGGCGGCGGCATTCGTCTCCCCTAAATTCTCCGGTCAAATCCTCCTCGAATCGCTTCTCTCTCTCTCCCAAGAAATCTCCGCCATGAAACCGCTTCAATTCCTTCTCAAACGCTATTCCAACTCCATGATTCGCAAATCCAGATTGCTCGAGGTTTTTCTCCAAGATCTCCGCCGCAATCAGATCGTTTCTCTTTCCGCCTCCGCCTCGCTCTGTCTCGAAGAAATGTACATAGTTTTACAGAGAATCAAGACCTTGATTGAAGACTGTTCTAATGGAAGCAAGATGTGGCTACTCACTCAGAATGAATCCATCGCTAACAATTTCCACGAACTTACCTTGGATTTATCGACTCTACTCGATATCTTCCCTGTGAAGGACGCTGGATTAACAGAAGACGTCGAGGAATTGTTCTACCTCTTGAGAAATCAGTGCTCCGAATCCGCCGCTTTCGTCGATCCGAAAGATGAAGGTCTCCGATTCAGAGTTTTGAAGACGATCGATCGGATTAAGGACGAAATCGTCCCCGATCCTTCGGAGTTATCGGAGATTTTCTCGAGGATCGATATTCGAGATTCGTCGAGTTGCAGAGAGGAAATCGAGAATCTCGAGGACGAAGTTCAGAATCAAACGGATGAGAAATCGAGATCCGATGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTATTGTTTGGAGCGTCGACGCCGGAATCTGGATTCCGGCGGAAGGATTCGATTTCCGATTTGGCTTTACCGGCGGATTTCAGGTGTCCGATTAGTCTGGATTTAATGCAGGACCCTGTCGTCGTGGCTACAGGGCATACGTACGATCGTGCGGCCATTACTCTCTGGATTGAATCTGGGCACAACACGTGTCCGAAGACAGGTCAGACCCTGGCCCACACGAACCTAATTCCGAACCGGGCATTGAAAAATCTGATAGCGATGTGGTGCCGTCAGGAGAAAATTCCGTTCGACGTAACGGAAACCAACAAAGAGAAGTCAGTCAACGGCGTCACGTTAAACAAAGCGGCGTTAGAAGCCATGAGAATGACGGCGTCGTTTCTCGTTAACAAACTCGCCACGTCATCGGATTCTGTAAACGACGTCGTTCACGAGCTTCGCGTTTTGGCGAAAACAGATTCCGGCAGCCGTCGATTCATCGCCCAAGCCGGAGCTCTGCCGTTGCTCGTTCGTTACCTCAACTCCGACAACCCGACGCTGCAGGTTAACGCCGTCACGACGGTGCTCAACCTCTCCATATTCGAATCGAACAAAACGCTGATAATGGAGACCGACGGCGCGTTGATCGGAGTGATTGAAGTCCTCCGCTCTGGCGCCACGTGGGAGGCGAAAGGGAACGCTGCCGCCACGATCTTCAGCCTCTCCAGTAACCATTCTTACCGGCGAAGATTGGGGAGGAAGACACGTGTCATAAGGGGATTGCTGGATTTGGCCAAAGACGGGCCGATTGGGTCGAAGAGGGATGCTCTAGTGACGATTTTGACATTGGCCGGTGATCGGGAGACCGTCGGGAAGTTAATCGAAGGTGGAGTAATGGATACGGTGGGCCAATTGATGAACAGTCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTCTGGCGATTGCTTCCAGTTTTTATGTGATTAAGAAATTGGGGACGGTTTTAAGAGAGGGCTCCGATAGGGCCAGAGAGAGCGCCGCCGCGGCGCTGGTGACGATGTGCCGGCAAGGTGGGTCGGAGTTGGTGACGGAGCTGGCGGCGATGAGCGGGATTGAGAGAGTCATTTGGGAACTGATGGGGAGTGGGACGATGAGGGGGCGGCGAAAGGCGGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGACGGAAACGGCGGAGGAGACTCGATGACGGTCACTTCGTCAAGAATCGGCGGCGATTCAACGACCATTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAA 2058 52.28 MAVSPDSFPPRKRRPSAAAFVSPKFSGQILLESLLSLSQEISAMKPLQFLLKRYSNSMIRKSRLLEVFLQDLRRNQIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFYLLRNQCSESAAFVDPKDEGLRFRVLKTIDRIKDEIVPDPSELSEIFSRIDIRDSSSCREEIENLEDEVQNQTDEKSRSDVIALIGLVRYAKCVLFGASTPESGFRRKDSISDLALPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQEKIPFDVTETNKEKSVNGVTLNKAALEAMRMTASFLVNKLATSSDSVNDVVHELRVLAKTDSGSRRFIAQAGALPLLVRYLNSDNPTLQVNAVTTVLNLSIFESNKTLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSNHSYRRRLGRKTRVIRGLLDLAKDGPIGSKRDALVTILTLAGDRETVGKLIEGGVMDTVGQLMNSLPEEAVTILEVVVRKGGFLAIASSFYVIKKLGTVLREGSDRARESAAAALVTMCRQGGSELVTELAAMSGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGGDSMTVTSSRIGGDSTTIVSSSRGAIVHS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60502937 60505534 - Hsped.04g06910.1 Hepe04g0691 567829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0691 685 CDD RING-Ubox_PUB 270 322 IPR045210 -
Hepe04g0691 685 SUPERFAMILY RING/U-box 262 341 - -
Hepe04g0691 685 PANTHER U BOX DOMAIN-CONTAINING 52 648 - -
Hepe04g0691 685 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0691 685 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0691 685 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Hepe04g0691 685 Pfam U-box domain 270 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe04g0691 685 Gene3D - 375 644 IPR011989 -
Hepe04g0691 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Hepe04g0691 685 SUPERFAMILY ARM repeat 381 644 IPR016024 -
Hepe04g0691 685 Gene3D - 31 140 IPR036537 GO:0007166(InterPro)
Hepe04g0691 685 Coils Coil 208 235 - -
Hepe04g0691 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 351 IPR013083 -
Hepe04g0691 685 Pfam Armadillo/beta-catenin-like repeat 402 438 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2083 Hepe-Chr3:78754612 Hepe04g0691 Hepe-Chr4:60502937 5.21e-22 dispersed
Hepe04g0691 Hepe-Chr4:60502937 Hepe07g1836 Hepe-Chr7:61148643 1.31e-130 dispersed
Hepe04g0691 Hepe-Chr4:60502937 Hepe07g2239 Hepe-Chr7:66798880 3.17e-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0691 - - - 0.0