Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0692 ATGCTGCCGGACCTCGACGACGACCTCTCAACGACGGCGCTCCCTTCCACCGCCGCCGACTCTGGAATTCTCTTCGGAAAATACGAAATCGGTAAGCTCTTGGGCTGTGGAGCTTTCGCCAAGGTCTACCATGGCAGAAACGTCTTCACTGGTCAGAGCGTTGCGATTAAGGCCGTTAACAAACTCAAAGTTCTCCGAGGCGGTTTCACCGCTCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGCCATCCCAACGTCGTTCGTCTCTTCGAAGTTCTCGCCACCAAGACGAAGATTTACTTCGTCATGGAGTTCGCCAAAGGTGGGGAGCTCTTCCGGAAGGTCTCCAAAGGACGATTCAGTGAGAATCTCAGCCGTCGTTACTTTCAGCAGTTGATCACCGCCGTTGGCTACTGCCATTCCAGAGGTATTTTCCATCGCGATTTGAAACCGGAGAATCTCCTCCTCGACGACAATTTCGATCTCAGAGTTTCCGATTTCGGACTCTCTGCTTTCACCGATCAGATTCGTCCCGACGGATTGCTCCACACGCTATGTGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCGCTAAGAAAGGCTACGACGGCGCCAAGATCGACGTCTGGTCCTGCGGTATTATCCTCTACGTTCTTACTGCTGGTTATCTCCCCTTTAACGATTCCAATTTAATGGCCATGTATCGGAAGATTTACAGAGGCGATTTCCGCTGCCCTAAGTGGACTTCTCCAGATCTGCAGCGCTTTCTCTCCCGACTTCTCGATACGAATCCGGTGACCAGGATCACCGTCGATGAGATTCTCCTAGATCCGTGGTTCGTGAAGGGATTTCATCAGGAGGAGAAGCTTCAACTCGAAGATTCCGATTCAGAGCTTTACGGTGATGTGAACAATTCCAAATGTTTGAACGCTTTCGATCTTATTTCCTTCTCGCCTGGCTTCGATTTGACTGGATTGATGAACGAGACGGAGTTTTCCTCCGGCGTTGAGAGGTTCCTCTCCGCCGAGTCGCCGGAGAAGATTATTGTGACGGTTGAGGAAGCTTCGAAGTTGGAAAATGCAGCGGTGGAGAAGAACGGCTGGGGAGTTAAAGTGGAGGGCCTCGACGGCGGTTTCGTCGCCGTGATTGATGTTTTCCGGCTGACGGAGGAATTGGTGGTTGTTGAGATCAAGAACAGAGTAAGGGAAATGGATCAAGGTCGTCAAATTTGGAAACATAAATTGAGACCTCAACTCGATTGTTTAATCTACCGGTCGGACTGA 1290 51.09 MLPDLDDDLSTTALPSTAADSGILFGKYEIGKLLGCGAFAKVYHGRNVFTGQSVAIKAVNKLKVLRGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFRKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSAFTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTAGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLQRFLSRLLDTNPVTRITVDEILLDPWFVKGFHQEEKLQLEDSDSELYGDVNNSKCLNAFDLISFSPGFDLTGLMNETEFSSGVERFLSAESPEKIIVTVEEASKLENAAVEKNGWGVKVEGLDGGFVAVIDVFRLTEELVVVEIKNRVREMDQGRQIWKHKLRPQLDCLIYRSD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60565146 60566866 + Hsped.04g06920.1 Hepe04g0692 567830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0692 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe04g0692 429 Gene3D Phosphorylase Kinase; domain 1 19 107 - -
Hepe04g0692 429 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0692 429 SMART serkin_6 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0692 429 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
Hepe04g0692 429 FunFam Non-specific serine/threonine protein kinase 18 305 - -
Hepe04g0692 429 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Hepe04g0692 429 SUPERFAMILY Protein kinase-like (PK-like) 24 291 IPR011009 -
Hepe04g0692 429 FunFam Aurora kinase A 21 111 - -
Hepe04g0692 429 CDD CIPK_C 312 422 - -
Hepe04g0692 429 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g0692 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g0692 429 Gene3D Kinase associated domain 1, KA1 307 427 - -
Hepe04g0692 429 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524(InterPro)
Hepe04g0692 429 Pfam NAF domain 309 367 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0692 Hepe-Chr4:60565146 Hepe04g1922 Hepe-Chr4:74154937 3.22e-159 dispersed
Hepe08g0684 Hepe-Chr8:6162678 Hepe04g0692 Hepe-Chr4:60565146 7.01e-11 dispersed
Hepe10g0841 Hepe-Chr10:18953963 Hepe04g0692 Hepe-Chr4:60565146 1.12e-39 dispersed
HepeContig66g0067 Hepe-ChrContig66:5589760 Hepe04g0692 Hepe-Chr4:60565146 5.97e-40 dispersed
Hepe04g0692 Hepe-Chr4:60565146 Hepe04g0695 Hepe-Chr4:60664754 5.96e-132 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72721 PF00069 Pkinase 4.60E-69 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0692 - - - 0.0