Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0728 ATGGCCGCCACAAGCGTCTCCCACTCTCCCGATTTCCGCACCGAAATTTCCGCATCGCCGCCGACTCACGACGGCCTTTTCTTCTGGCAATACATGCTAGCCGGATCAATCGCAGGGTCCGTCGAGCACATGACCATGTTTCCAGTGGACACTCTCAAGACCCGAGTCCAAGCCCTCGGCGGATCATCTACAGTCCGACAAGCACTCGGCTCGATTCTGAAAGCGGAAGGTCCGGCCGGGCTCTACCGTGGAATCGGAGCAATGGGTCTCGGCGCCGGACCAGCACACGCCGTCTACTTCACAGTATACGAATTCTGCAAAGAAGGGTTTTCAATTGGGAACCCTAACAACCCATTAAGCCACGCCATTTCTGGAATCTGCGCGACGATGGTGAGCGACGCCGTGATTACGCCGATGGACGTGGTGAAACAGAGGCTGCAGTTGGAGGGAAGTCCTTATAAAGGAGTGGGAGATTGTGTGAGGAGGGTTTTGGTTGAGGAAGGAATTGGGGCGCTGTATGCTTCTTATCGGACCACGATTCTGATGAATGCGCCGTACACGGCGGTCCATTTTGCGACTTATGAAGCTGCGAAGAGGGGATTGAAGAAGTTCTGGCCGGGAAGTGACGACGATGGGAGGTTGGTTGTTCATGCTACGGCCGGTGCGGCGGCTGGGTGTCTTGCTGCTGCTCTTACGACGCCATTAGACGTTGTGAAAACTCGGCTGCAATGTCAGGGAGTATGTGGTTGCGACAGATTTTCAAGCAGTTCAATTGGGTACGTACTTGGGAGTGTGGTGAAGAAGGATGGATACAATGGCCTGATGAGGGGATGGATTCCAAGGATGCTGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACCTACGAGGCTTCAAAGACCTTCTTTCAACAAGACAACAATTAG 927 54.05 MAATSVSHSPDFRTEISASPPTHDGLFFWQYMLAGSIAGSVEHMTMFPVDTLKTRVQALGGSSTVRQALGSILKAEGPAGLYRGIGAMGLGAGPAHAVYFTVYEFCKEGFSIGNPNNPLSHAISGICATMVSDAVITPMDVVKQRLQLEGSPYKGVGDCVRRVLVEEGIGALYASYRTTILMNAPYTAVHFATYEAAKRGLKKFWPGSDDDGRLVVHATAGAAAGCLAAALTTPLDVVKTRLQCQGVCGCDRFSSSSIGYVLGSVVKKDGYNGLMRGWIPRMLFHAPAAAICWSTYEASKTFFQQDNN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 61144111 61147359 - Hsped.04g07280.1 Hepe04g0728 567866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0728 308 Gene3D Mitochondrial carrier domain 180 308 IPR023395 -
Hepe04g0728 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
Hepe04g0728 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 109 IPR018108 -
Hepe04g0728 308 Pfam Mitochondrial carrier protein 26 110 IPR018108 -
Hepe04g0728 308 Pfam Mitochondrial carrier protein 214 306 IPR018108 -
Hepe04g0728 308 Pfam Mitochondrial carrier protein 116 202 IPR018108 -
Hepe04g0728 308 Gene3D Mitochondrial carrier domain 4 179 IPR023395 -
Hepe04g0728 308 SUPERFAMILY Mitochondrial carrier 26 297 IPR023395 -
Hepe04g0728 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
Hepe04g0728 308 PANTHER MITOFERRIN-1-RELATED 16 306 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Hepe04g0728 308 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085(InterPro)
Hepe04g0728 308 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085(InterPro)
Hepe04g0728 308 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Hepe04g0728 308 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085(InterPro)
Hepe04g0728 308 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1558 Hepe-Chr3:72376520 Hepe04g0728 Hepe-Chr4:61144111 6.59e-23 dispersed
Hepe04g0728 Hepe-Chr4:61144111 Hepe10g0782 Hepe-Chr10:15047223 5.78e-33 dispersed
Hepe04g0728 Hepe-Chr4:61144111 Hepe08g0701 Hepe-Chr8:6320678 1.50e-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0728 K15113 - csv:101210464 533.487