Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0791 ATGGCGGCTTTGGAGACTGCCGGAGTTGATTTGGAGGAAGGCGGCGGACGGGCGGCGGAGAGGGATTGTAGGATTTGCCATTTGGGTTTGGAGAGCAATAGCAATGAGTGTGGAATTGGAATTGAATTGGGTTGTTCTTGTAAGAATGATTTGGCTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGTCATTCTGTTGTGAGAAATGTGATTGGAGCACATGAACAAACAGAGCAGTTCCATGAGTCGAACAATGGGACGGTATCGACAGCAACGGTTGCAGCGTCGGTGGCTGCAGCTCCCGGTGGTGGCCGGAGCTTCTGGCAGGTTCACCGGGTCCTGAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTGATATCTTGGCTCTTTCATTTCAATGTGCCAACATAA 447 48.32 MAALETAGVDLEEGGGRAAERDCRICHLGLESNSNECGIGIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSVVRNVIGAHEQTEQFHESNNGTVSTATVAASVAAAPGGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPT 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 61956364 61957793 + Hsped.04g07910.1 Hepe04g0791 567929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0791 148 SMART ringv_2 22 75 IPR011016 GO:0008270(InterPro)
Hepe04g0791 148 Pfam RING-variant domain 23 74 IPR011016 GO:0008270(InterPro)
Hepe04g0791 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 84 IPR013083 -
Hepe04g0791 148 PANTHER ZINC FINGER, RING-CH-TYPE 8 147 - -
Hepe04g0791 148 ProSiteProfiles Zinc finger RING-CH-type profile. 15 81 IPR011016 GO:0008270(InterPro)
Hepe04g0791 148 SUPERFAMILY RING/U-box 20 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0791 Hepe-Chr4:61956364 Hepe04g1925 Hepe-Chr4:74186486 2.09e-21 dispersed
Hepe01g1521 Hepe-Chr1:80423915 Hepe04g0791 Hepe-Chr4:61956364 1.22e-12 wgd
Hepe10g1294 Hepe-Chr10:48716842 Hepe04g0791 Hepe-Chr4:61956364 2.92e-32 wgd
Hepe02g3339 Hepe-Chr2:82988698 Hepe04g0791 Hepe-Chr4:61956364 3.47e-58 wgd
Hepe04g0791 Hepe-Chr4:61956364 Hepe05g0126 Hepe-Chr5:1475258 8.85e-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0791 - - - 0.0