Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0824 ATGGCTTCGTGCCGCATAAATCTTCCTCACCGGTGGTGTTCTCCCGGAACGCCGCGCTTTGGCCCCACTTCTTCCTTCCAAAACCCTAGATTTCTTCCTCTCTTTCCATCTTCTCTCCTCAATTCCAATAAGTTATCCTATTCCAGACTCCGCAACCGAAGCTTTCTTGCCATGAAAGCTCACATGGCGACGGAGGCCAAGCCTATTTCCGAGGATAAAATGCTTGTTTATGTTCCGCCTCATCCCTTGATCAAGCACTGGGTTTCTGTTTTGAGGAATGAACAAACCCCTTGCCCCATTTTTAAAAGTGCAATGGCAGAGCTTGGGAGGTTACTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACGGGGGAGATACAATCACCTATGGGTGTTGCTTCAGTTGAGTTTATCGATCCAAGAGAGCCTGTGGCGATCATACCCATCCTCAGAGCTGGTCTAGCTCTTGCAGAACACGCATCAGCTGTATTGCCTGCAACAAAAATGTACCATCTTGGGATGAGCAGGGATGAGGAGACTCTTCAGCCAACTGTATATCTTAACAAGTTACCTGAAAAATTTCCTGAAGGTTCTCGAATCTTTGTGATTGATCCCATGCTTGCAACAGGTGGCACAATAGTGGCAGCTGTTGACCTCCTAAAGGAACGTGGAATTGGCAACAAGCAAATTAAAGTGATATCTGCTGTTGCTGCCCCTCCCGCCCTTCAAAAACTCAGTGAGAAGTTTCCAGGGCTACACGTATACACCGGAATGATTGACCCGACGGTTAATGAGAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGCAGCTTCGGCACATGA 858 47.2 MASCRINLPHRWCSPGTPRFGPTSSFQNPRFLPLFPSSLLNSNKLSYSRLRNRSFLAMKAHMATEAKPISEDKMLVYVPPHPLIKHWVSVLRNEQTPCPIFKSAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFIDPREPVAIIPILRAGLALAEHASAVLPATKMYHLGMSRDEETLQPTVYLNKLPEKFPEGSRIFVIDPMLATGGTIVAAVDLLKERGIGNKQIKVISAVAAPPALQKLSEKFPGLHVYTGMIDPTVNEKGFIIPGLGDAGDRSFGT 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 62382133 62386254 - Hsped.04g08240.1 Hepe04g0824 567962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0824 285 Gene3D - 65 285 IPR029057 -
Hepe04g0824 285 CDD PRTases_typeI 141 261 IPR000836 -
Hepe04g0824 285 FunFam Uracil phosphoribosyltransferase 73 285 - -
Hepe04g0824 285 NCBIfam uracil phosphoribosyltransferase 76 285 IPR005765 GO:0004845(InterPro)|GO:0006223(InterPro)
Hepe04g0824 285 Pfam Uracil phosphoribosyltransferase 78 285 - -
Hepe04g0824 285 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 77 262 IPR050054 -
Hepe04g0824 285 SUPERFAMILY PRTase-like 76 284 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0824 K00761 - - csv:101209447 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0824 Hepe-Chr4:62382133 Hepe10g1913 Hepe-Chr10:55950207 1.94e-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe08g0964 . 76 554 PRT Gene Family AT2G16570 85.7 2.1e-240 828.6
Hepe08g0964 . 76 554 PRT Gene Family AT4G34740 86.3 5.0e-242 833.9
Hepe08g0964 . 27 527 PRT Gene Family AT4G38880 69.8 2.8e-194 675.2
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe06g1657 . 6 104 PRT Gene Family AT4G22570 82.8 5.3e-44 173.7
Hepe06g1149 . 5 97 PRT Gene Family AT4G22570 84.9 1.5e-43 172.2
Hepe08g1328 . 78 170 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Hepe10g0243 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Hepe06g1657 . 1 96 PRT Gene Family AT4G12440 84.4 1.1e-40 162.5
Hepe06g1149 . 1 96 PRT Gene Family AT4G12440 82.3 2.5e-40 161.4
Hepe08g1328 . 74 169 PRT Gene Family AT4G12440 78.1 2.6e-37 151.4
Hepe10g0243 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe02g2821 . 1 186 PRT Gene Family AT1G71750 67.0 1.9e-71 265.8
Hepe10g1913 . 13 467 PRT Gene Family AT1G55810 85.3 3.7e-227 784.3
Hepe02g0973 . 19 482 PRT Gene Family AT1G55810 73.3 6.5e-200 693.7
Hepe10g1913 . 64 480 PRT Gene Family AT3G27440 74.4 1.8e-183 639.0
Hepe02g0973 . 80 482 PRT Gene Family AT3G27440 74.7 2.6e-179 625.2
Hepe02g0973 . 1 482 PRT Gene Family AT3G27190 86.3 1.3e-246 849.0
Hepe10g1913 . 3 466 PRT Gene Family AT3G27190 73.7 2.0e-207 718.8
Hepe04g0824 . 3 285 PRT Gene Family AT3G53900 67.2 1.4e-105 379.8
Hepe10g1913 . 1 467 PRT Gene Family AT4G26510 84.3 2.7e-233 804.7
Hepe02g0973 . 11 482 PRT Gene Family AT4G26510 75.4 1.7e-211 732.3
Hepe02g0973 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-246 847.0
Hepe10g1913 . 3 469 PRT Gene Family AT5G40870 73.0 5.0e-206 714.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39