Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0864 ATGGTGTTTCCCTCCATCCCATCCAATTATCTTGATCCAACAACCCATCAATGGCAACAGCAACAACAACAAACAGCAAGCCATCAATCAGGAAGTTTTCAGCTGGTGTCGCCACCACAAGTTCGGGTCGGGTCGATGACGGATCGGGCTCGAATGGCGAACCTGCCGGTGCCCGAGACGGCACTGAAGTGCCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGTCGCCGCTACTGGACTAGAGGCGGTGCCCTTAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATCATAAAAGAACTAAAAGTACCTCTAAATCTCCGGTTAACTCACAATGCCAACAACCTAGTACTACTACTGCAGCTGAGCTTTCATTAGGTGAAGCAATGAGATTAAATTACAGTGCTATTTCCACACCAAATGAAGGAGCTGGTGATTCAGCTCATCCTATTGGGATAACCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAGCTTCATCAAATGCAACCATCGCCGTTTCTCGCAACTTCGTCAGCTCGGTTTCTCGAAAATAACGGCGTCGACGCATCGTCGAGCTATAACATCGCCGGGATTCAGAAGAAAATGGAAGCGACGAAGATGGAGGAAGACGGACAACAACAACAACAACAACAAGAAGTTCATTTGGGGAAGCCATTTTGGGGAGTTGTTGGAGGGAGTGATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCACAATTATGA 822 47.69 MVFPSIPSNYLDPTTHQWQQQQQQTASHQSGSFQLVSPPQVRVGSMTDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNHKRTKSTSKSPVNSQCQQPSTTTAAELSLGEAMRLNYSAISTPNEGAGDSAHPIGITNFLGFDQIQWRPQLQLHQMQPSPFLATSSARFLENNGVDASSSYNIAGIQKKMEATKMEEDGQQQQQQQEVHLGKPFWGVVGGSDRHYWSGFNPSSSSHSQL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 62891157 62892645 - Hsped.04g08640.1 Hepe04g0864 568002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0864 273 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g0864 273 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g0864 273 MobiDBLite consensus disorder prediction 107 136 - -
Hepe04g0864 273 MobiDBLite consensus disorder prediction 121 136 - -
Hepe04g0864 273 MobiDBLite consensus disorder prediction 13 35 - -
Hepe04g0864 273 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe04g0864 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 228 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0864 Hepe-Chr4:62891157 Hepe08g0855 Hepe-Chr8:7793042 2.96e-33 dispersed
Hepe10g1221 Hepe-Chr10:47279715 Hepe04g0864 Hepe-Chr4:62891157 2.94e-44 wgd
Hepe02g3032 Hepe-Chr2:79457090 Hepe04g0864 Hepe-Chr4:62891157 1.61e-40 wgd
Hepe04g0864 Hepe-Chr4:62891157 Hepe05g0180 Hepe-Chr5:2229298 4.25e-46 wgd
Hepe04g0864 Hepe-Chr4:62891157 Hepe08g0797 Hepe-Chr8:7152359 5.02e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55385 PF02701 zf-Dof 2.90E-31 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0864 - - - 0.0