Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0870 ATGAGCTTGAACATAACCTCCATCAAAACCGCCTCCAATGGCGTTTGGCAAGGCGACAACCCTCTTGATTTCGCCTTCCCTCTCCTAATTCTTCAGTCACTTCTCATCTTAATCCTCACCCGCTTCCTCGCCTTCCTTTTCAAACCCCTCCGTCAGCCCAAAGTCATCGCCGAGATCGTCGGCGGGATTCTTCTCGGTCCTTCCGCTTTTGGACGAAACAAAGCTTATTTGCACCGAATTTTTCCTCCATGGAGCACTCCCATTCTCGAGTCTGTTGCCAGCATTGGTTTGTTGTTCTTTTTGTTCCTGGTTGGACTGGAACTCGATTTGTCCTCCATCCGCCGCAGCGGACGGAGGGCTTTCGGAATCGCCTTTGCTGGAATCTCCGTGCCTTTCATCTCTGGCATGGGCGTTGCTTTCATTCTCCGCAAGACCATCGACGGCGCCGATAAAGTCGGTTACGGTCAGTTCGTTGTATTTATGGGCGTCGCTCTCTCCATCACTGCCTTCCCAGTTCTCGCTCGCATTTTAGCTGAACTCAAACTACTCACCACTGAAGTCGGCGAAACAGCTATGGCTGCGGCCGCCTTCAACGACGTCGCTGCCTGGATCCTCCTGGCTCTCGCCGTCGCCCTTGCCGGTAACGGCGAGGAAGGCGGGCCTCACAAGAGTCCGTTGATTTCGGTGTGGGTCCTACTTTCGGGAGTCGGGTTCGTGATTTTCATGATGGTAGTGATCCGACCGGGAATGAAGTGGATCGCACGGCGGTGCTCGTACGAGCACGACGCCGTCGACGAGGTGTACATCTGTTTGACGCTGATGGGGGTGTTGGCGTCGGGATTCGTGACGGATTTGATCGGAATTCATTCGATATTTGGGGGTTTTATATTCGGATTGACGGTGCCGAAAGGGGGGAGGTTTGCGGAGAGATTGATAGAGAGGATTGAGGATTTCGTATCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGGTTGAAGACGGACGTGGCCAAGATCAAAGGGGGGAAATCGTGGGGGTTGCTGGCGCTGGTGATTTCCACGGCGTGTGCAGGTAAGATTCTGGCGACGTTCGTGGCGGCGATGGCGTTTCTGATGCCGGCGAGGGAGGCGCTGGCGTTGGGGCTCCTTATGAACACCAAAGGCTTGGTTGAACTCATCGTGCTCAATATTGGCAAGGAGAAAAAGGTTCTAAACGACGAAGTATTCGCCATATTAGTATTAATGGCGCTATTCACAACCTTCATCACCACCCCCACCGTCATGGCGGTTTACAAACCAGCCCGCCGCCGCAGCGGCTCCACACGAACCCGCCGCAAACTCCGAGACCTCCCTGCCGACGAGCTCCGGATCCTGGCCTGCCTCCACAGCTCAGGCAACGTCCCCTCCCTAATCAGCCTGACCGAGTCAACTCGCAGCACAAAAAACTCCTCCCTCAAACTCTTCGTAATGCACCTGGTCGAGCTCACCGAGCGGTCCTCTTCTATAATGATGGTCCAACGGGCCCGCAGAAACGGCTTTCCTTTCTTCGCCCGGTTCAGAAAGGCCGGCGAGTGGCGCGACCAGATGGCCGGGGCCTTCCAGGCCTACAGCCAATTGGGCCGGGTCAAGGTCCGGCCCACTACGGCGGTTTCTTCATTGGCCACCATGCATGATGATATCTGCCACGTGGCGGATGATAAGAGGGTGACGATGATCGTGTTGCCGTTTCATCGGAATTGGAGGGTGGTCGGCGACGAGGAGGAGGAGAATGTGGGCCATGGGTGGAGAGTTGTGAACCAGCGGGTTCTTAAGACCGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGGTTTGGGGCTAATGGGCCTGGGCCTACGCTTTGTGTGGCCCAGAGGATATGTGTCGTGTTTTTTGGTGGGCCCGATGACCGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGACCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCTTCGACGGCGGATGGGGTGGAGGGTAGTAATGTCATTTTGCGACCCGTGCATTCCAAATCTAGCGACAACCATTATACCTTCTCTTCAGCTCCAATCAACAAGGAAAAAGAGAAGGAGCTAGACGATGCAGCAATGGAAGAATTCAGAAGCAAATGGGATGCAATAGTTGAGTACACAGAGAAGCAGGCCAGCAACATGAACATGATGGTTGAAGGGGTGGTGGGCATCGGAAAGGAAGGTGGTTACGACCTAATCGTGGTCGGGAAGGGTCGGGTTCCATCAAGCATGGTGGCGAAACTAGCGGATCGAGCAGCGGAGCACGCCGAGTTGGGGCCGGTAGGGGACATATTGGCGAGCTCCGGCAGGGGAATAGTATCTTCAATACTAATAATTCAACAGCATGAAGGAGGTACTCCTGCAGAAGAAACTCCAGTTTTGAAGATAGCATAA 2457 55.03 MSLNITSIKTASNGVWQGDNPLDFAFPLLILQSLLILILTRFLAFLFKPLRQPKVIAEIVGGILLGPSAFGRNKAYLHRIFPPWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIAFAGISVPFISGMGVAFILRKTIDGADKVGYGQFVVFMGVALSITAFPVLARILAELKLLTTEVGETAMAAAAFNDVAAWILLALAVALAGNGEEGGPHKSPLISVWVLLSGVGFVIFMMVVIRPGMKWIARRCSYEHDAVDEVYICLTLMGVLASGFVTDLIGIHSIFGGFIFGLTVPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKSWGLLALVISTACAGKILATFVAAMAFLMPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARRRSGSTRTRRKLRDLPADELRILACLHSSGNVPSLISLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARRNGFPFFARFRKAGEWRDQMAGAFQAYSQLGRVKVRPTTAVSSLATMHDDICHVADDKRVTMIVLPFHRNWRVVGDEEEENVGHGWRVVNQRVLKTAPCSVAVLVDRGFGANGPGPTLCVAQRICVVFFGGPDDREALELGGRMADHPAVKVTVVRFRPSTADGVEGSNVILRPVHSKSSDNHYTFSSAPINKEKEKELDDAAMEEFRSKWDAIVEYTEKQASNMNMMVEGVVGIGKEGGYDLIVVGKGRVPSSMVAKLADRAAEHAELGPVGDILASSGRGIVSSILIIQQHEGGTPAEETPVLKIA 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 62991912 62999117 + Hsped.04g08700.1 Hepe04g0870 568008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0870 818 FunFam Cation/H(+) antiporter 15 28 439 - -
Hepe04g0870 818 Pfam Sodium/hydrogen exchanger family 39 428 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Hepe04g0870 818 Gene3D - 466 782 - -
Hepe04g0870 818 PANTHER CATION/H + ANTIPORTER 9 809 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Hepe04g0870 818 Gene3D - 28 441 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0870 K26731 - - csv:101207589 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1567 Hepe-Chr2:20798154 Hepe04g0870 Hepe-Chr4:62991912 9.15e-22 dispersed
Hepe04g0870 Hepe-Chr4:62991912 Hepe07g0782 Hepe-Chr7:9508398 3.82e-258 dispersed
Hepe04g0870 Hepe-Chr4:62991912 Hepe04g0258 Hepe-Chr4:45783203 1.26e-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g701 . . . . . . . . . . . Cma07g00971 . Car07g00960 . Cpe10g00875 . Bhi03g01987 . . . Hepe04g0870 . . . . . . . . . . Cone10ag0300 . . Lsi01g01409 . . . . . . . . Bpe02g00838 . . . . Cmo07g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme08g02387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1241 . 10 791 Antiporter Super Family AT2G13620 73.9 0.0e+00 1166.0
Hepe04g0870 . 75 803 Antiporter Super Family AT3G53720 68.3 7.8e-278 953.4
Hepe07g0782 . 83 780 Antiporter Super Family AT3G53720 50.4 2.0e-185 646.4
Hepe07g0782 . 1 797 Antiporter Super Family AT5G41610 68.9 1.5e-308 1055.4
Hepe07g0783 . 1 645 Antiporter Super Family AT5G41610 67.5 4.4e-247 851.3
Hepe04g0870 . 8 815 Antiporter Super Family AT5G41610 51.2 1.0e-211 733.8
Hepe07g0782 . 9 796 Antiporter Super Family AT4G23700 62.5 1.8e-280 962.2
Hepe07g0783 . 1 644 Antiporter Super Family AT4G23700 66.0 4.9e-238 821.2
Hepe07g0782 . 4 779 Antiporter Super Family AT3G17630 64.4 3.1e-277 951.4
Hepe07g0783 . 3 644 Antiporter Super Family AT3G17630 63.1 4.1e-221 765.0
Hepe04g0870 . 2 812 Antiporter Super Family AT3G17630 51.3 6.7e-208 721.1
Hepe07g0782 . 5 784 Antiporter Super Family AT1G64170 56.5 5.0e-235 811.2
Hepe07g0783 . 2 644 Antiporter Super Family AT1G64170 55.1 6.2e-185 644.8
Hepe08g1241 . 10 791 Antiporter Super Family AT2G13620 73.9 0.0e+00 1166.0
Hepe07g0782 . 5 784 Antiporter Super Family AT1G64170 56.5 5.0e-235 811.2
Hepe07g0783 . 2 644 Antiporter Super Family AT1G64170 55.1 6.2e-185 644.8
Hepe07g0782 . 9 796 Antiporter Super Family AT4G23700 62.5 1.8e-280 962.2
Hepe07g0783 . 1 644 Antiporter Super Family AT4G23700 66.0 4.9e-238 821.2
Hepe07g0782 . 1 797 Antiporter Super Family AT5G41610 68.9 1.5e-308 1055.4
Hepe07g0783 . 1 645 Antiporter Super Family AT5G41610 67.5 4.4e-247 851.3
Hepe04g0870 . 8 815 Antiporter Super Family AT5G41610 51.2 1.0e-211 733.8
Hepe07g0782 . 4 779 Antiporter Super Family AT3G17630 64.4 3.1e-277 951.4
Hepe07g0783 . 3 644 Antiporter Super Family AT3G17630 63.1 4.1e-221 765.0
Hepe04g0870 . 2 812 Antiporter Super Family AT3G17630 51.3 6.7e-208 721.1
Hepe04g0870 . 75 803 Antiporter Super Family AT3G53720 68.3 7.8e-278 953.4
Hepe07g0782 . 83 780 Antiporter Super Family AT3G53720 50.4 2.0e-185 646.4
Hepe03g1756 . 47 790 Antiporter Super Family AT3G52080 55.2 2.0e-236 815.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43