Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0890 ATGGGAAACGCCCATAACCATGGCCACCGCAACCATTTCAACCATGGCGTAAATATCTCTCATTCTCCCTCCAATAAATATACCCAATCCGAACCTGCTTCTCCAAATTCGACCTTCACCACAAACATGGAGTCCTTGCCTTACGCCCACGTTGATTCCAGCCTTCGAGCCCTCTCCGGTCAGGCCGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTCTTTATTGCGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTTTGGATTGTCTTTGAAGTTTCGGGCACAATTCACTTGTCTTCGTATCTGAATGTGTCATCTTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAGTTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTAGATGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGACGGGTTGATTGATATCACCCGAGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCACTGTTTTTTCGATGGTACACGTCAACGGCATCCTCGGGTTAGATATGCTCAAGTGCATCTCTACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAGTGCAACATATACGAAGCGGGACAGAAAAATGTGGCATTTAAATATTATACCGAAAAGGCAGCAGACAAAGAAGAGCCCTCAAGTGGGATCATATGGTCTGATGGAGATTTATTTGTGAATAGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGCTGAACACAACTTGTTTCATCCTTCAAAACATTATTCTGCTTGGACTGTGGAACCTCCAACAGATGCTCTTAAACAGATTCTCCAACATTGTACTGGATGCCAAAATATCCTGAGGCCCACTGATCAGCCACAGATGAAGTCCTTGCCCTACGCCCTCGTTGATTCGAGCCTTCGATCCCTCGCTGGTCAGGCCGAGGGCTTTGGCCGCTCTGCCATTGGTGGACTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCAGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCCCTTTGGATTGTCTTTGAAGTCTCGGGCACAATTTACTTGTCTTCGTATCTGAATGTGTCATCTTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAATTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGACGGGTTGATTGATATCACCCGAGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCACTGTTTTTTCGATGGTACACGTCAACGGCATCCTCGTGTTAGATATGCTCAAGTGCATCTCTACAATAATTTCACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAGTGCAACATATACGAAGCGGGACAGAAAAAGGTGGCATTTAAATATCTAACTGAGAAGGCAGAAGACAAGGAAGAGCCCTCGAGTGGGATCATATGGTCTGATGGAGATTTATTTGTAAATAGCACTCAAACTGGGCTGTTGGCTGCAACTACTGCTGAACAGAACTTGTTTCATCCCTCAAAACATTACTCTGCTTGGACTGTGGAACCTGCAACAGATGCTCTCAAACAGATTCTCCAACATTGTACTGGATGTCAAAACATCCCAAGGCCCACTGATCAGGCACTGGTACCTTAG 2115 45.06 MGNAHNHGHRNHFNHGVNISHSPSNKYTQSEPASPNSTFTTNMESLPYAHVDSSLRALSGQAEGFGRSAIGGLHGSLYCVTNLADDGPGSLRFGCRMKEPLWIVFEVSGTIHLSSYLNVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKNVAFKYYTEKAADKEEPSSGIIWSDGDLFVNSTQSGLLAATAAEHNLFHPSKHYSAWTVEPPTDALKQILQHCTGCQNILRPTDQPQMKSLPYALVDSSLRSLAGQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRMKEPLWIVFEVSGTIYLSSYLNVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNFTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAEDKEEPSSGIIWSDGDLFVNSTQTGLLAATTAEQNLFHPSKHYSAWTVEPATDALKQILQHCTGCQNIPRPTDQALVP 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63187948 63195246 - Hsped.04g08900.1 Hepe04g0890 568028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0890 704 SMART pbh1 171 192 IPR006626 -
Hepe04g0890 704 SMART pbh1 525 546 IPR006626 -
Hepe04g0890 704 SMART pbh1 501 522 IPR006626 -
Hepe04g0890 704 SMART pbh1 144 169 IPR006626 -
Hepe04g0890 704 SMART pbh1 474 499 IPR006626 -
Hepe04g0890 704 SMART pbh1 195 216 IPR006626 -
Hepe04g0890 704 SMART amb_all 403 616 IPR002022 -
Hepe04g0890 704 SMART amb_all 88 286 IPR002022 -
Hepe04g0890 704 MobiDBLite consensus disorder prediction 15 41 - -
Hepe04g0890 704 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Hepe04g0890 704 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Hepe04g0890 704 PRINTS Pollen allergen Amb family signature 241 260 IPR018082 -
Hepe04g0890 704 PANTHER PECTATE LYASE 18-RELATED 384 683 IPR045032 GO:0030570(InterPro)
Hepe04g0890 704 SUPERFAMILY Pectin lyase-like 389 696 IPR011050 -
Hepe04g0890 704 Pfam Pectate lyase 117 279 IPR002022 -
Hepe04g0890 704 Pfam Pectate lyase 447 609 IPR002022 -
Hepe04g0890 704 SUPERFAMILY Pectin lyase-like 60 367 IPR011050 -
Hepe04g0890 704 MobiDBLite consensus disorder prediction 1 41 - -
Hepe04g0890 704 Gene3D - 379 688 IPR012334 -
Hepe04g0890 704 Gene3D - 48 355 IPR012334 -
Hepe04g0890 704 ProSiteProfiles Zinc finger integrase-type profile. 321 362 IPR003308 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0890 Hepe-Chr4:63187948 Hepe07g2538 Hepe-Chr7:69842734 7.44e-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0890 K01728 - csv:101219724 673.7