Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0911 ATGTTGGACCTCAATCTATGTATTCTCTCCGGCGATTCCGCCGATATAAACCCCTTGGAACTTTCCGGCGCCGGAGTTGAGAGTCCCATTTCTTCCTCCGTCGTCAACGCCGACGACGACTCCTCTTCCAACGCCGATTGCGGTTTCACTTTCTCTTTCAGCATCCTCAACAACAACGACGACGATCAACGCGACCGGACGGCTCGGTTTCCCCCAGTCGCCGGTGGGTTTTCCTCCGGCGTCTGTTTACAGAGAAAATGGCTGGATTCTAACGGAATCGTGGTTCAACAGTCCGTTCATCCGGCGAAGAAGGGCCGGCGAGGCCCAAAATCAAGAAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTAGGAGGTTTTGACACAGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATCAAGTTTCGAGGGGTTAATGCTGATATAAATTTCAACATCAGCGATTACAGTGAAGATATTCAACAGATGAGTAATTTTAGTAAAGAGGAATTTGTGCATATTCTTCGAAGGCAAAGCACTGGATTTTCAAGAGGGAGTTCCAAATATAGAGGGGTTACTTTGCATAAGTGTGGGCGATGGGAAGCTCGCATGGGACAGTTTTTGGGGAAAAAGTATGTGTACCTTGGGCTGTTTGATAGTGAAATAGAGGCTGCAAGAGCATACGATAAAGCTGCCATAAAATACAATGGAAAGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAAATTGCTTTTGAATCTGAAAACCAAGACATGGATGATATTGACTTGAACTTGGGAATTGCCCCTCCTTGGCCATCTGAGGACCAAAAGGACAACCTTAATGGCTGTGCTCCAAATTTCTGTGGCTTAAAGAAATTAGATTCTGAGTTATCTGGGGTGATGCTTGAAAACCATGCTTCTGTGGCTATGAGATCACACCCTTCTTTTATGAGTTGTGCCAATTTCTTTCCCAACTGCCAGGAAAGAGCAATGGAGAAGAGAATGGAAGTTGAATCCTTACCGAACTGGGGTTGGCAGATCCCAAGCCCCTACGGCGGAGCAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCGCCGTTCCTCCGCCCTCTCCCCGTCATCTTCTTCCAACCGCGCCCTTCTTCCGCTACCACATTCCGCCCTCTATTCCCGCCACGAACACCATACCTCATTTCTACTGA 1299 47.88 MLDLNLCILSGDSADINPLELSGAGVESPISSSVVNADDDSSSNADCGFTFSFSILNNNDDDQRDRTARFPPVAGGFSSGVCLQRKWLDSNGIVVQQSVHPAKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVNADINFNISDYSEDIQQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGKEAVTNFDQSSYEMEIAFESENQDMDDIDLNLGIAPPWPSEDQKDNLNGCAPNFCGLKKLDSELSGVMLENHASVAMRSHPSFMSCANFFPNCQERAMEKRMEVESLPNWGWQIPSPYGGAATSVPFFSTAASSGFPSSPAAVPPPSPRHLLPTAPFFRYHIPPSIPATNTIPHFY 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63387122 63392814 + Hsped.04g09110.1 Hepe04g0911 568049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0911 432 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 65 296 - -
Hepe04g0911 432 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Hepe04g0911 432 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Hepe04g0911 432 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
Hepe04g0911 432 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe04g0911 432 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Hepe04g0911 432 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0911 Hepe-Chr4:63387122 Hepe04g1257 Hepe-Chr4:68074587 4.85e-103 dispersed
Hepe01g0877 Hepe-Chr1:72899616 Hepe04g0911 Hepe-Chr4:63387122 6.18e-68 wgd
Hepe04g0911 Hepe-Chr4:63387122 Hepe04g1146 Hepe-Chr4:66596881 9.39e-08 wgd
Hepe04g0911 Hepe-Chr4:63387122 Hepe05g0230 Hepe-Chr5:2708197 1.34e-139 wgd
Hepe04g0911 Hepe-Chr4:63387122 Hepe08g0848 Hepe-Chr8:7688552 4.70e-119 wgd
Hepe04g0911 Hepe-Chr4:63387122 Hepe09g0476 Hepe-Chr9:4398524 4.91e-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55389 PF00847 AP2 1.70E-10 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0911 K09284 - csv:101211008 649.047