Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe04g0911 | ATGTTGGACCTCAATCTATGTATTCTCTCCGGCGATTCCGCCGATATAAACCCCTTGGAACTTTCCGGCGCCGGAGTTGAGAGTCCCATTTCTTCCTCCGTCGTCAACGCCGACGACGACTCCTCTTCCAACGCCGATTGCGGTTTCACTTTCTCTTTCAGCATCCTCAACAACAACGACGACGATCAACGCGACCGGACGGCTCGGTTTCCCCCAGTCGCCGGTGGGTTTTCCTCCGGCGTCTGTTTACAGAGAAAATGGCTGGATTCTAACGGAATCGTGGTTCAACAGTCCGTTCATCCGGCGAAGAAGGGCCGGCGAGGCCCAAAATCAAGAAGCTCGCAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTAGGAGGTTTTGACACAGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATCAAGTTTCGAGGGGTTAATGCTGATATAAATTTCAACATCAGCGATTACAGTGAAGATATTCAACAGATGAGTAATTTTAGTAAAGAGGAATTTGTGCATATTCTTCGAAGGCAAAGCACTGGATTTTCAAGAGGGAGTTCCAAATATAGAGGGGTTACTTTGCATAAGTGTGGGCGATGGGAAGCTCGCATGGGACAGTTTTTGGGGAAAAAGTATGTGTACCTTGGGCTGTTTGATAGTGAAATAGAGGCTGCAAGAGCATACGATAAAGCTGCCATAAAATACAATGGAAAGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAAATTGCTTTTGAATCTGAAAACCAAGACATGGATGATATTGACTTGAACTTGGGAATTGCCCCTCCTTGGCCATCTGAGGACCAAAAGGACAACCTTAATGGCTGTGCTCCAAATTTCTGTGGCTTAAAGAAATTAGATTCTGAGTTATCTGGGGTGATGCTTGAAAACCATGCTTCTGTGGCTATGAGATCACACCCTTCTTTTATGAGTTGTGCCAATTTCTTTCCCAACTGCCAGGAAAGAGCAATGGAGAAGAGAATGGAAGTTGAATCCTTACCGAACTGGGGTTGGCAGATCCCAAGCCCCTACGGCGGAGCAGCAACTTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCCGCCGCCGTTCCTCCGCCCTCTCCCCGTCATCTTCTTCCAACCGCGCCCTTCTTCCGCTACCACATTCCGCCCTCTATTCCCGCCACGAACACCATACCTCATTTCTACTGA | 1299 | 47.88 | MLDLNLCILSGDSADINPLELSGAGVESPISSSVVNADDDSSSNADCGFTFSFSILNNNDDDQRDRTARFPPVAGGFSSGVCLQRKWLDSNGIVVQQSVHPAKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVNADINFNISDYSEDIQQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGKEAVTNFDQSSYEMEIAFESENQDMDDIDLNLGIAPPWPSEDQKDNLNGCAPNFCGLKKLDSELSGVMLENHASVAMRSHPSFMSCANFFPNCQERAMEKRMEVESLPNWGWQIPSPYGGAATSVPFFSTAASSGFPSSPAAVPPPSPRHLLPTAPFFRYHIPPSIPATNTIPHFY | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 63387122 | 63392814 | + | Hsped.04g09110.1 | Hepe04g0911 | 568049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe04g0911 | 432 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 65 | 296 | - | - | |
Hepe04g0911 | 432 | SUPERFAMILY | DNA-binding domain | 206 | 265 | IPR016177 | GO:0003677(InterPro) | |
Hepe04g0911 | 432 | CDD | AP2 | 206 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | FunFam | AP2-like ethylene-responsive transcription factor | 206 | 266 | - | - | |
Hepe04g0911 | 432 | SUPERFAMILY | DNA-binding domain | 114 | 173 | IPR016177 | GO:0003677(InterPro) | |
Hepe04g0911 | 432 | Pfam | AP2 domain | 206 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | Pfam | AP2 domain | 115 | 163 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | ProSiteProfiles | AP2/ERF domain profile. | 115 | 171 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | Gene3D | AP2/ERF domain | 114 | 173 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | Gene3D | AP2/ERF domain | 206 | 265 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | PRINTS | Ethylene responsive element binding protein signature | 208 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | PRINTS | Ethylene responsive element binding protein signature | 246 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | ProSiteProfiles | AP2/ERF domain profile. | 207 | 264 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | SMART | rav1_2 | 207 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | SMART | rav1_2 | 115 | 177 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe04g0911 | 432 | FunFam | AP2-like ethylene-responsive transcription factor | 114 | 173 | - | - | |
Hepe04g0911 | 432 | CDD | AP2 | 114 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe04g1257 | Hepe-Chr4:68074587 | 4.85e-103 | dispersed | |
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe04g0911 | Hepe-Chr4:63387122 | 6.18e-68 | wgd | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe04g1146 | Hepe-Chr4:66596881 | 9.39e-08 | wgd | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe05g0230 | Hepe-Chr5:2708197 | 1.34e-139 | wgd | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe08g0848 | Hepe-Chr8:7688552 | 4.70e-119 | wgd | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe09g0476 | Hepe-Chr9:4398524 | 4.91e-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55389 | PF00847 | AP2 | 1.70E-10 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe04g0911 | K09284 | - | csv:101211008 | 649.047 |