Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0920 ATGATGATGATGTCTGGTATTGACTTTTCTGTTCCTTCTTCTGTTGGTGAGTTTGTTCCTCAACAAAGCTCTCAGCTTTATCATCTTCCTCAAAACCCTAACCCTAATAATCCAAATCCTGATGATTCTCTCCCTCCTCCTCTCCCCAAGAAGAAGAGAAATTTGCCAGGAAAACCAGATCCAGATGCGGAAGTAATTGGTTTATCTCCCAACACTCTGATGGCGACAAATAGATTCATTTGTGAGATTTGCAATAAAGGTTTCCAAAGGGACCAAAACTTGCAGCTACACAGAAGAGGGCACAATCTGCCATGGAAGCTGAGGCAAAGAAGCAACAAAGAAGTGGTGAAGAAGAAGGTTTATATTTGCCCTGAGAAGTCTTGTGTTCACCACGATCCGGGCCGAGCGCTCGGAGATCTCACCGGAATCAAAAAGCATTTCAGTAGAAAACATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAAATATGCTGTTCAATCCGACTGGAAAGCTCACTCCAAGACTTGTGGAACTCGAGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGACAGCTTCATAACTCATAGGGCATTCTGTGATGCTTTAGCTGAAGATAGTGCAAGGCTAATCTCATCAGTAGCAGCAAATAATTCAAAATCCAATTTCATTGGGAATTCATCTCTCTTCAATTCCCATCACTTTGGTCATGTTCTTCCCAATTCCAATTCCCAAGGTGGAGGAATATTTAATCTCCGACCAGACCATAATAATTTTGACAACTTTAATAATAATAATAATAATAGTCTTATAATTCCAAATGAAGATGAATCACCCAACTTCCCTAATTTATACGAAATCTCAAACCGAATATTGGGTTTGAATAACAAGAACAACCCTTCTTCAAAAACAGCAATCAGCCTCTCTTTGTCCAACTCCTCCTCCTCCTCCTCGTTTTGCTCGGCCACGGGCGGTGGCGGTGGCGGTGGAACGAAGGCGGTTACGATGCCGATGCCGATGTCGGCGACGGCGCTGTTGCTGAAAGCGGCGCAATTGGGGTCAACAAAAAGCAATCCATGTTTCTCGGGGAATAGTGTGGGAGTTATGAGTTCATTATGTTGGAATTCGTTTGATGATCAAAGCAAAGGGGAGTTGTTGTTATTGCAAGAAATGTTTGATTTTGAGAGTGGTAATTACTGCAAGAAGATGGAAGAGGAATCCTCCAATGGGTTGAGGGATTTTCTTGGGACGAATCAGAATCAGAATCAGAATCAGAATAATGTGCAGTTGATTCCATTCACCAAATTTGCTAACTCCTCCATGAGCTCGGAGATGGGTTTGACCCAATTTATTGGTAATAATCGATGA 1380 42.25 MMMMSGIDFSVPSSVGEFVPQQSSQLYHLPQNPNPNNPNPDDSLPPPLPKKKRNLPGKPDPDAEVIGLSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKSCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEDSARLISSVAANNSKSNFIGNSSLFNSHHFGHVLPNSNSQGGGIFNLRPDHNNFDNFNNNNNNSLIIPNEDESPNFPNLYEISNRILGLNNKNNPSSKTAISLSLSNSSSSSSFCSATGGGGGGGTKAVTMPMPMSATALLLKAAQLGSTKSNPCFSGNSVGVMSSLCWNSFDDQSKGELLLLQEMFDFESGNYCKKMEEESSNGLRDFLGTNQNQNQNQNNVQLIPFTKFANSSMSSEMGLTQFIGNNR 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63494671 63498269 + Hsped.04g09200.1 Hepe04g0920 568058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0920 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 425 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe04g0920 459 MobiDBLite consensus disorder prediction 20 67 - -
Hepe04g0920 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 182 222 - -
Hepe04g0920 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Hepe04g0920 459 SMART c2h2final6 156 176 IPR013087 -
Hepe04g0920 459 SMART c2h2final6 79 101 IPR013087 -
Hepe04g0920 459 SMART c2h2final6 121 151 IPR013087 -
Hepe04g0920 459 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Hepe04g0920 459 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Hepe04g0920 459 Gene3D Classic Zinc Finger 62 131 - -
Hepe04g0920 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 117 151 - -
Hepe04g0920 459 Gene3D Classic Zinc Finger 132 212 - -
Hepe04g0920 459 MobiDBLite consensus disorder prediction 33 52 - -
Hepe04g0920 459 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Hepe04g0920 459 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Hepe04g0920 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 155 179 - -
Hepe04g0920 459 FunFam protein indeterminate-domain 12-like 58 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0920 Hepe-Chr4:63494671 Hepe10g1107 Hepe-Chr10:43772864 1.21e-105 dispersed
Hepe02g2586 Hepe-Chr2:72942126 Hepe04g0920 Hepe-Chr4:63494671 1.18e-68 transposed
Hepe04g0920 Hepe-Chr4:63494671 Hepe05g0251 Hepe-Chr5:2990693 3.01e-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55391 PF12171 zf-C2H2_jaz 6.60E-05 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0920 K25870 - csv:101221389 425.631