Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0928 ATGTCTAAGGATGTTGAAGCCGGACCCCGTGGTGGGTTTTCCGCCGACGACTACCTCGACCCGCCTCCGGCTCCGCTCTTCGACGCCGACGAGCTTTTGCAGTGGTCGTTTTACAGGGCTGTCATCGCTGAGTTTGTTGCCACGCTTTTGTTTCTGTACGTCGGAGTTCTCACTGTGATTGGTAATCAGAGTCAGTCTTCCAACGCCGCGTGCGGCGGCGTTGGCGTTCTCGGTATCGCTTGGGCGTTCGGTGGTACCATGTTCGTTCTCGTTTATTGTACCGCCGGCATTTCTGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTATGGGACGGAAGGTTTCGTTGGTCAGAGCTGTACTGTACATAGCGGCTCAGTGTTCGGGAGCCATTTGTGGGTGTGGGCTCGTCAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCCACGGTGGAGCCACCGAGCTCGCCGAGCCCTTCAGCCCCGGCGCTGGCCTTGCTGCCGAGATCATCGGAACCTTCGTTCTGGTATACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCTAGAGATTCTCACGTCCCAGTTTTGGCGCCACTCCCAATTGGGTTTGCGGTGTTCGTGGTGAATTTGGCCACGATTCCGGTCACCGGCGCCGGTATCAACCCAGCTCGGAGCTTCGGGTCTGCAGTGATGTTCAACAATCACAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATACATTTTGAGAGGAGGAGCTGCTAAGACCTTCAGATCCTTCCGGAGTTCCTCAATTTGA 849 53.71 MSKDVEAGPRGGFSADDYLDPPPAPLFDADELLQWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSNAACGGVGVLGIAWAFGGTMFVLVYCTAGISGGHINPAVTFGLFMGRKVSLVRAVLYIAAQCSGAICGCGLVKSLKKANFNAFHGGATELAEPFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAAIYHEYILRGGAAKTFRSFRSSSI 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63560610 63562728 - Hsped.04g09280.1 Hepe04g0928 568066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0928 282 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Hepe04g0928 282 Gene3D Glycerol uptake facilitator protein. 24 282 IPR023271 -
Hepe04g0928 282 NCBIfam MIP family channel protein 43 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 Pfam Major intrinsic protein 32 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 SUPERFAMILY Aquaporin-like 31 267 IPR023271 -
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0928 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 278 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe04g0928 282 FunFam Probable aquaporin PIP1-2 24 281 - -
Hepe04g0928 282 CDD MIP 39 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0928 Hepe-Chr4:63560610 Hepe04g0932 Hepe-Chr4:63598978 2.02e-154 dispersed
Hepe04g0928 Hepe-Chr4:63560610 Hepe04g0930 Hepe-Chr4:63574595 6.73e-153 proximal
Hepe01g1025 Hepe-Chr1:74942416 Hepe04g0928 Hepe-Chr4:63560610 8.89e-145 wgd
Hepe02g2960 Hepe-Chr2:78862804 Hepe04g0928 Hepe-Chr4:63560610 7.52e-143 wgd
Hepe04g0928 Hepe-Chr4:63560610 Hepe05g0256 Hepe-Chr5:3034094 2.82e-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0928 K09872 - csv:101215842 484.567