Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0930 ATGGCCAAGGACTCTGAATCCGGTGGATTCGCCGCCAAGGACTACCACGACCCACCACCGGCGCCCTTGTTCGACGCCGACGAGCTCACTCAGTGGTCTTTTTACAGAGCCATCATCGCCGAGTTCATCGCCACTCTTCTCTTCTTGTACGTTACTGTTCTCACTGTCATTGGCTACAGTAGCCAGTCCGATACTAAAAACGGCGGCGAGATCTGCGGCGGCGTCGGCATTCTCGGCATCGCTTGGGCCTTCGGTGGAATGATCTTCGTTCTCGTCTACTGCACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGTTGTTCTTGGCTCGGAAAGTCTCGTTGGTGAGAGCGATATTGTACATGGTGGCTCAATGTTTGGGTGCAATTTGTGGATGTGCGTTGGTCAAATCGTTTCAGAAGGGTCGCTACCATCGCTACGGCGGTGGAGCCAATTCCCTCGCCGACGGTTACAGCACCGGCACCGGCTTAGCCGCTGAGATCATCGGAACATTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCTAGGGATTCTCACGTTCCTGTTCTAGCACCACTCCCAATTGGGTTCGCCGTGTTCATGGTTCACCTGGCCACCATTCCGATCACGGGCACCGGTATTAACCCGGCTCGGAGCTTCGGCGCTGCGGTTGTCTTCAACCAGAGCAAACCATGGGATGATCAGTGGATTTTCTGGGTTGGACCATTCATTGGAGCTGCAATTGCTGCGTTTTATCATCAGTTCATTTTGAGAGCTGGAGCAGTGAAAGCTCTGGGATCATTCAGGAGTACTCATAGCGTTTGA 855 53.57 MAKDSESGGFAAKDYHDPPPAPLFDADELTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDTKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMVAQCLGAICGCALVKSFQKGRYHRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNQSKPWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63574595 63575822 - Hsped.04g09300.1 Hepe04g0930 568068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0930 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe04g0930 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Hepe04g0930 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Hepe04g0930 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Hepe04g0930 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Hepe04g0930 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0930 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1025 Hepe-Chr1:74942416 Hepe04g0930 Hepe-Chr4:63574595 1.03e-169 dispersed
Hepe02g2960 Hepe-Chr2:78862804 Hepe04g0930 Hepe-Chr4:63574595 3.38e-165 dispersed
Hepe04g0930 Hepe-Chr4:63574595 Hepe04g0932 Hepe-Chr4:63598978 1.48e-191 dispersed
Hepe04g0928 Hepe-Chr4:63560610 Hepe04g0930 Hepe-Chr4:63574595 6.73e-153 proximal
Hepe04g0930 Hepe-Chr4:63574595 Hepe04g0931 Hepe-Chr4:63591221 8.09e-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0930 K09872 - csv:101214884 529.25