Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0931 ATGTCGAAGGATCTTGAAGCTGGAAGCCGCGGTGGGTTTAGCGCCAAGGATTACCAAGATCCACCCGCCGCCCCATTGATCGACGCACAGGAATTTGCTCAGTGGTCGTTTTACAGAGCCATTATAGCCGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTCACTGTTCTCACCGTCATTGGGTATAAGGCTCAGAGTGATGTTCAAAATGGCGGCGACATTTGTGGCGGCGTCGGCATTTTGGGCATCGCTTGGGCCTTCGGCGGCATGATTTTTGTTCTCGTTTATTGCACCGCGGGTATTTCTGGTGGGCATATAAATCCGGCGGTGACTTTTGGGCTGCTTTTGGCAAGGAAGGTGTCGTTGGTTAGAGCTGTGTTGTATATTGTGGCTCAGAGTTTGGGCGCCATTTGTGGCTGTGCGTTGGTGAAAGCATTTCAAAATGCTCACTACATTCAATACGGCGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCGCCGGCACCGGATTGGCCGCTGAGATCATCGGAACCTTCGTTCTTGTTTATACCGTCTTTTCAGCTACCGATCCCAAGAGAAATGCTAGAGATTCCCATGTTCCGGTTTTGGCGCCACTTCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCGACCATTCCGATCACGGGCACTGGCATCAACCCAGCTCGGAGCTTCGGAGCCGCAGTGGTGTTCAACAAATCCAAGCCCTGGGATGATCAAGTATATATAATAATACCAATTTCCTCTTCAAATTTGACATTCATTCTAAATTTGAAGTGTTATCTAACGTTATATTTTGTTTTGTTTTTAAACAGTGGATCTTTTGGGTTGGACCATTCATTGGTGCTGCCATTGCTGCAATTTATCACCAATTCGTATTAA 906 48.01 MSKDLEAGSRGGFSAKDYQDPPAAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKAQSDVQNGGDICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVLYIVAQSLGAICGCALVKAFQNAHYIQYGGGANSLADGYSAGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQVYIIIPISSSNLTFILNLKCYLTLYFVLFLNSGSFGLDHSLVLPLLQFITNSY 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63591221 63593081 + Hsped.04g09310.1 Hepe04g0931 568069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0931 301 SUPERFAMILY Aquaporin-like 31 257 IPR023271 -
Hepe04g0931 301 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 256 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe04g0931 301 FunFam Probable aquaporin PIP1-2 24 267 - -
Hepe04g0931 301 Pfam Major intrinsic protein 32 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 NCBIfam MIP family channel protein 43 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0931 301 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Hepe04g0931 301 Gene3D Glycerol uptake facilitator protein. 24 268 IPR023271 -
Hepe04g0931 301 CDD MIP 39 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0931 Hepe-Chr4:63591221 Hepe08g0886 Hepe-Chr8:8024237 4.62e-142 dispersed
Hepe04g0930 Hepe-Chr4:63574595 Hepe04g0931 Hepe-Chr4:63591221 8.09e-154 tandem
Hepe04g0931 Hepe-Chr4:63591221 Hepe04g0932 Hepe-Chr4:63598978 8.12e-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0931 K09872 - csv:101216085 451.825