Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0932 ATGTCTAAGGATCTCGAAGCCGGTGCTTTCGCCGCCAAGGATTACCAAGACCCACCTCCGGCCCCATTGATCGACGCCGAGGAGCTCACTCAATGGTCGTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTCTGTTCTTGTACGTCACCGTTCTCACCGTCATTGGCTACAGCAACCAATCCGACACCAAGAACGGTGGTCAAATCTGCGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTTGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCCGGAGGGCATATTAACCCGGCGGTGACTTTTGGGTTGTTTTTAGCTCGGAAAGTGTCTTTGGTTAGAGCAATTTTGTATATGGTGGCTCAATGTTTGGGCGCCATTTGTGGATGTGCGTTGGTGAAATCCTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCAAACTCCCTCGCCGATGGCTACAGCACCGGCACCGGCTTGGCCGCTGAGATCATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAACGCTAGAGATTCTCACGTTCCCGTTTTGGCGCCACTCCCAATTGGGTTTGCAGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCGGCTCGAAGCTTTGGAGCTGCTGTGGTCTTCAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATTGTATTGAGGGCAGGAGCAGTTAAAGCTTTGGGATCGTTCAGAAGTTCTACTGCTGTATAA 855 52.16 MSKDLEAGAFAAKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63598978 63600485 + Hsped.04g09320.1 Hepe04g0932 568070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0932 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Hepe04g0932 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Hepe04g0932 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Hepe04g0932 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe04g0932 284 FunFam Probable aquaporin PIP1-2 21 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0928 Hepe-Chr4:63560610 Hepe04g0932 Hepe-Chr4:63598978 2.02e-154 dispersed
Hepe04g0930 Hepe-Chr4:63574595 Hepe04g0932 Hepe-Chr4:63598978 1.48e-191 dispersed
Hepe04g0932 Hepe-Chr4:63598978 Hepe08g0886 Hepe-Chr8:8024237 2.08e-173 dispersed
Hepe04g0931 Hepe-Chr4:63591221 Hepe04g0932 Hepe-Chr4:63598978 8.12e-159 tandem
Hepe04g0932 Hepe-Chr4:63598978 Hepe04g0933 Hepe-Chr4:63602108 5.86e-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0932 K09872 - csv:101215366 544.273