Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0938 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAGGAGATGGAGAAATGCTTAGATCCTCAGCTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGGCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCTTGTGCGCCTGTTGATTTCAGGAACTGTTCTAAGGTTCCTTCGTATACCCTTTGTAGAGTTTCTGCCATCAAGTTCCTTGCTGATTCTGACACGGATGAGGTCTTTGCCAAACTTAGGTTGATTCCCATTAATGGAAGTGAACTAGATTTTGAAGATGATGGAGGAATTGGGGGGAGGCTTAATGGGTCCGAACAGGATAAGCCAACTTCGTTTGCAAAGACACTGACTCAGTCTGATGCCAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCCGAAACGATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAGACCATTCTTGCTAAGGATGTTCACGGTGAGACATGGAAATTTAGGCACATTTATCGGGGGACGCCTCGGCGGCATCTTTTGACCACTGGGTGGAGTACTTTTGTTAACCATAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGGGCGGAGAATGGAGATCTCTGTGTTGGGATTAGACGGGCGAAGAGGGGAATTGGAGATGGACCGGAGTCGTCGTGTGGATGGAATCCAGCGGGTGGGAACTGCGCTGTCCCATATGGAGCGTTCTCAGCGTTTTTGAGGGAAGATGAAAACAACAGACTCACGAGGTCTGCTGCTAATGGCTTGAATGGAAATGGAGGTCTTATTGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTGCAAATGGGAAGCCCTTTGAAATAGTATACTACCCAAGAGCTAGTACTCCTGAGTTCTGTGTCAAGGCAGGACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACTGAAGACTCTTCACGGATAAGCTGGTTCATGGGAACCATTAACTCGGTTCAGGTCGCTGACCCATTGCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGATGAACCGGATTTACTTCAGAACGTGAAACGCGTTAGCCCATGGTTGGTCGAATTGGTATCGAACATGTCTCCTATTCACCTTGCCCCCTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCAGATTTCCCCCTCGATAACCAGCCTCCTATGCCGTCGTTCTCTAGTTATCTCCATGGGCCCGGCAGCCCCTTTGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTGTTTCCGATTGGTTATCGATCACTGGATCCAGCTACTGCTGGATCAACTAGACTTTCTGGTAATGCAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACTATGGCACATTCTACTCAAGCATCAAAGAAATTTGACGACGTAAAGACACCCCAGCTAATACTTTTTGGCCGACCGATACTTACAGAATTGCAGATGTCTCAAAGCTGCTCTGGTGATACTGTTTCTCCCGTTGGAACTGGTAATAGTTCGTCAGATGGAAACGGAGATAAAATGACAAATTTCTCCGATGGTTCTGGATCTGCTCTGCATCAACAAGGTCAACCAGAGCGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGAAGTCGAGCCTAACTTGGACACTGGCCACTGTAAAGTGTTTATGGAATCAGAAGATGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGATGAATTGTACAGAAAACTGGGAAATATGTTTGGTATAGAGAATTCAGAGACGTTGAACCATGTCTTATACCGTGGTGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGGTATGTTTCTGCAACATTGAAATGTTATGTTAAAAAATTTCGTTTCCATTGTTTGATTAACGATTTGTTTTGTGTTTCAGCGAGTTCATCAAGACAGCAAGAAGATTGA 2151 46.26 MITFMDSKEKLKEMEKCLDPQLWHACAGGMVQMPAVNARVFYFPQGHAEHACAPVDFRNCSKVPSYTLCRVSAIKFLADSDTDEVFAKLRLIPINGSELDFEDDGGIGGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVPYGAFSAFLREDENNRLTRSAANGLNGNGGLIGKGKVKPESVIEAATLAANGKPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPPMPSFSSYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIGYRSLDPATAGSTRLSGNAMTEKPSMSENVSCLLTMAHSTQASKKFDDVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGDKMTNFSDGSGSALHQQGQPERSSCENFQWYKDNRQEVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYDELYRKLGNMFGIENSETLNHVLYRGVSGAVKHVGDEQFRYVSATLKCYVKKFRFHCLINDLFCVSASSSRQQED 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63646112 63649920 - Hsped.04g09380.1 Hepe04g0938 568076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0938 716 MobiDBLite consensus disorder prediction 551 595 - -
Hepe04g0938 716 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Hepe04g0938 716 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Hepe04g0938 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 685 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe04g0938 716 ProSiteProfiles PB1 domain profile. 617 701 IPR053793 -
Hepe04g0938 716 Gene3D - 328 402 - -
Hepe04g0938 716 FunFam Auxin response factor 329 402 - -
Hepe04g0938 716 Gene3D - 120 224 IPR015300 -
Hepe04g0938 716 Pfam Auxin response factor 291 374 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe04g0938 716 SUPERFAMILY DNA-binding pseudobarrel domain 116 228 IPR015300 -
Hepe04g0938 716 Gene3D - 615 694 - -
Hepe04g0938 716 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Hepe04g0938 716 FunFam Auxin response factor 120 224 - -
Hepe04g0938 716 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0938 Hepe-Chr4:63646112 Hepe08g0894 Hepe-Chr8:8125352 8.16e-311 dispersed
Hepe10g0526 Hepe-Chr10:6080792 Hepe04g0938 Hepe-Chr4:63646112 4.63e-110 transposed
Hepe02g2954 Hepe-Chr2:78820392 Hepe04g0938 Hepe-Chr4:63646112 2.41e-266 wgd
Hepe04g0938 Hepe-Chr4:63646112 Hepe08g0874 Hepe-Chr8:7925941 4.79e-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55392 PF02362 B3 1.60E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0938 K14486 - csv:101217039 1276.54