Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0943 ATGGCCCAAATCGAGACGATCTGCAAGATCTCCACTCATCCCGACCCACTTAATTGGGGTTGGGCTGCTGAGTCCCTAAAGGGAAGCCATCTCGATGAAGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCACTTGTCAAGCTTGGTGGTGATACCCTCACAATTTCTCAAGTGGCTGCCATTGCTACTATGAACACTAATGTTACAGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGATTGGATTATGGATAGCATAAACAAGGGGGTCGATATCTATGGTATCACTACTGGTTTTGGTGCCACGTCTCACAGAAGAACCAAACAAGGTGGCGCTCTTCAGAAGGAGATGATTAGATTCTTGAATGCTGGGATATTTGGAAGTGGGGTTGAATCTAGCCATATTTTGCCTCACTCGGCTACGAGGGCAGCAATGGTTGTGAGAATCAATACTTTACTTCAAGGCTATTCAGGTATTAGATTTGAGATTTTGGAAGCCATAACGAAACTCTTGAACCATAACATCACTCCATGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATTGTTGGATTGCTCATTGGCCGATCGAACTCCAAGGCCATCGGACCAAATGGAGAAAGTATTGATGCGAAGGAGGCTTTCGAGCTAGCTGGCATTCATTCTGGTTTCTTTGAGCTGCAACCTAAAGAAGGTTTTGCTCTTGTTAATAGCACTGCTGTTGGTTCTGGATTAGCTTCTATTGTCCTCTTCGAAGCAAATATTTTGGTTGTTTTGTCGGAAATTCTTTCTGCTATTTTTGTTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCACTTGACTCATAAATTGAAGCACCACCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAGCTGCTAAGACGTTACATGAAATTGATCCACTTCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTAGGTCCATTGATTGAAGTTATTCGATTCTCGACGAAGTCCATTGAGCGAGAGATTAATTCAGTTAACGATAACCCTTTGATAGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATCGGAGTCTCTATGGACAATACTCGTTTGGCCATTTCTTCAATTGGAAAGCTCATGTTTGCCCAGTTCTCAGAACTTGTCAATGATTTCTACAACAACGGGTTGCCATCTAATCTTTCTGCAGGTAGAAACCCAAGCTTAGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAGAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACATCTGAAGCCATTGATATATTGAAACTCATGTCTTCCACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTTAAAAGCACAGTAACCCAAGTAGTGAAGAAAGTGTTGACCACATCCTCTAACAATGCATCTCACATATCGAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGACAGAGAGTACACTTTTGCTTATATAGATGACCCATGTAGTGCTACGTACCCACTAATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCACGCACTCGCAAATGGTGATAACGAAAATAATGCAAACAGTTCAATCTTCTCAAAGATTACTACTTTTGAAGAGGAATTAAAGGTAATTTTACCAAAGGAAGTTGAAAATACAAGGTTGGCATACGAGAGTGGAAATGCACATATTAAGAATCAAATTGAGGAATGTAGATCTTATCCATTATATAGATTTGTGAGGGAAGAATTGGGAACAAATTTGCTAACGGGTGAAAAAATGATATCTCCAGGAGAAGAGTGTGAAAAGGTATTCACGGCCTTGTGTCAAGGAAAGATGATTGATTCTATCTTAAAATGTTTGAAGGAGTGGAACGGTGCACCAATTACCATATGTTAA 2121 41.21 MAQIETICKISTHPDPLNWGWAAESLKGSHLDEVKRMVEEYRRPLVKLGGDTLTISQVAAIATMNTNVTVELSESARAGVKASSDWIMDSINKGVDIYGITTGFGATSHRRTKQGGALQKEMIRFLNAGIFGSGVESSHILPHSATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIVGLLIGRSNSKAIGPNGESIDAKEAFELAGIHSGFFELQPKEGFALVNSTAVGSGLASIVLFEANILVVLSEILSAIFVEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKTLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAISSIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVTQVVKKVLTTSSNNASHISRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDNENNANSSIFSKITTFEEELKVILPKEVENTRLAYESGNAHIKNQIEECRSYPLYRFVREELGTNLLTGEKMISPGEECEKVFTALCQGKMIDSILKCLKEWNGAPITIC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63784125 63786401 - Hsped.04g09430.1 Hepe04g0943 568081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0943 706 CDD PAL-HAL 52 516 IPR001106 -
Hepe04g0943 706 FunFam Phenylalanine ammonia-lyase 519 640 - -
Hepe04g0943 706 Pfam Aromatic amino acid lyase 53 529 IPR001106 -
Hepe04g0943 706 Gene3D Fumarase/aspartase (Central domain) 253 701 - -
Hepe04g0943 706 SUPERFAMILY L-aspartase-like 15 706 IPR008948 GO:0003824(InterPro)
Hepe04g0943 706 PANTHER HISTIDINE AMMONIA-LYASE 11 706 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Hepe04g0943 706 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 188 204 IPR022313 GO:0016841(InterPro)
Hepe04g0943 706 Gene3D - 519 640 IPR023144 -
Hepe04g0943 706 Gene3D - 7 252 IPR024083 -
Hepe04g0943 706 FunFam Phenylalanine ammonia-lyase 253 565 - -
Hepe04g0943 706 NCBIfam phenylalanine ammonia-lyase 15 696 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Hepe04g0943 706 FunFam Phenylalanine ammonia-lyase 7 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1065 Hepe-Chr5:51629891 Hepe04g0943 Hepe-Chr4:63784125 0.0 transposed
Hepe06g0344 Hepe-Chr6:12824240 Hepe04g0943 Hepe-Chr4:63784125 0.0 transposed
Hepe09g0901 Hepe-Chr9:9037024 Hepe04g0943 Hepe-Chr4:63784125 1.80e-288 transposed
Hepe01g1033 Hepe-Chr1:75051102 Hepe04g0943 Hepe-Chr4:63784125 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0943 K10775 - csv:101218856 1235.32