Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0960 ATGCTGCCCACAACCTGCATTGTGCTGCTGGCTTTGCTGCTACCCTCCCTCTCGCCGCTCGGCACCGCCGCCGCCACTCTCAACGTCACTCTCCCCGGCCAGCACCCGAGCCCGGAACTGGTTGCACAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACGAGAAAGCAATTGCTTCAAATCTCAGAGAAAGATGAATCTTCTTCCTGCTACACCGGAAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGGCAACGCCTCGCCGATTGCGCGATTGGATTCGGCCAGTACGCACTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGACTCCGACGACGATCCAGTCAATCCAAAGCCTGGAACGTTAAGATACGCCGTGATACAGACACAACCTCTCTGGATCGTCTTCCCGGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGATGGCCGCGGCGTCAACGTCCACATCGTCGGCGGTGGATGTATCACCTTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACGATGGTCCGATCGAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGCTCGCTCTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGCTTTTGGGTCACAGCGACAATTACTTGCCGGACTCCGGAATGCAGGTAACGATAGCATTCAACCATTTCGGAGAAAAGCTAGTACAAAGAATGCCGCGATGCCGACTCGGCTACATCCACGTAGTCAACAACGACTTCACCCAATGGGAAATGTATGCAATCGGCGGTAGCGGTAATCCGACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGAGTCGAAACCTCCGAGTCGGAGTGGCGCGGCTGGAACTGGCGCTCTGACGGCGACATCCTAGTCAATGGTGCCTTCTTCATCACCTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAAGCCTACAGCATCGAGCCCAAATCCGTTGCCTTAATCGACCAGCTAACGTGGCACGCCGGCCCACTTGGCGTCGGTGGTAGGGACAACAATTTGGGGATGTGGCGGACTGCTACTAATAATGGCGGAGCCGGGTTTGATTTTGGGTCGGGCTTGGATTATACCGACGACATGTCGGAAAGCTTGTTGAGGACTGGGTGGAGTTGTTTTTTTGTTGGGGTGTTGTCGTTTTTAGTTGCGTTTGTTGTGATATGA 1428 53.01 MLPTTCIVLLALLLPSLSPLGTAAATLNVTLPGQHPSPELVAQEVHRKVNASITRKQLLQISEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQTQPLWIVFPANMLIKLSQELIFNSYKTLDGRGVNVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSDGDILVNGAFFITSGQGLEVKYEKAYSIEPKSVALIDQLTWHAGPLGVGGRDNNLGMWRTATNNGGAGFDFGSGLDYTDDMSESLLRTGWSCFFVGVLSFLVAFVVI 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63987509 63990890 - Hsped.04g09600.1 Hepe04g0960 568098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0960 475 Pfam Pectate lyase 159 337 IPR002022 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Hepe04g0960 475 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Hepe04g0960 475 SMART amb_all 148 345 IPR002022 -
Hepe04g0960 475 FunFam Pectate lyase 73 415 - -
Hepe04g0960 475 PANTHER PECTATE LYASE 18-RELATED 36 416 IPR045032 GO:0030570(InterPro)
Hepe04g0960 475 Gene3D - 73 415 IPR012334 -
Hepe04g0960 475 SUPERFAMILY Pectin lyase-like 69 386 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0960 Hepe-Chr4:63987509 Hepe05g1732 Hepe-Chr5:67554278 1.10e-188 dispersed
Hepe01g1056 Hepe-Chr1:75259090 Hepe04g0960 Hepe-Chr4:63987509 1.41e-219 wgd
Hepe02g2922 Hepe-Chr2:78289569 Hepe04g0960 Hepe-Chr4:63987509 2.81e-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0960 K01728 - csv:101203012 871.692