Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0969 ATGGGAGGAAAGTGCCCTCACAGAAGTGTAAGTAAGCGGAGATACTCCCACAAGAAAGCTCGGCGTACGAAATTTCAAATCAAAGGCGATGATATGGTTTACGATGAGTTGAAGAAACCCGAGGTGGAGAGGCCTTCTCTTCCTGTTGACGAAGATTTGCCTGGAATGGGGCAGTACTATTGTTTCCATTGCGACCGATACTTTGCGAATGTGTCTGTGAGGGATGAGCATTTCAAGACCAAGCGTCACAGGAAGAAGGTAAAACTTATGGCGGGTCCTGCACCACATACACAACTGGACGCTGATTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA 360 47.78 MGGKCPHRSVSKRRYSHKKARRTKFQIKGDDMVYDELKKPEVERPSLPVDEDLPGMGQYYCFHCDRYFANVSVRDEHFKTKRHRKKVKLMAGPAPHTQLDADLAAGMGMPDNGPKLMAM 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64075949 64077801 - Hsped.04g09690.1 Hepe04g0969 568107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0969 119 SUPERFAMILY beta-beta-alpha zinc fingers 47 110 IPR036236 -
Hepe04g0969 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe04g0969 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Hepe04g0969 119 MobiDBLite consensus disorder prediction 1 22 - -
Hepe04g0969 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Hepe04g0969 119 Gene3D Classic Zinc Finger 45 109 - -
Hepe04g0969 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0969 Hepe-Chr4:64075949 Hepe05g0629 Hepe-Chr5:9867102 1.55e-87 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0969 K14821 - csv:101222807 234.572