Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0981 ATGACCATGCCTATAATATCATCATCATTGCCATCCCGCGGGATGTGGGCATATCTGCTCATCGTGTTGTTGGTTATAGCCCATGCAAACGCAGCAGCCAGCCAGAAAGTTGTTAAAAAGAAGCAAAACAAGCCCCCATTTAAGCCTGGACCTTGGAAGGATGCTCATGCAACCTTTTACGAAGGTGGCTCGACAACCTTCGGTGGTGCATGTGCGTACGACGACGTGGAAAAGGAAGGGTATGGGATGGAGACGGCGGCGCTGAGCGATGCGCTGTTCAACAACGGGACGAGCTGCGGCGCTTGCTTCGAAATAAAATGCGTTGAAAGTACTAACTTGTGCAAGCCCGGGCAGCCCTCGCTTATAGTTACGGGCACCAACCGCTGCCCGCCCAATAGCCCTCACTGCAATCCCCCGCTCGAGCATTTTGATATAGCCAAACCTGTTTTTCAAAACATTGCTGACTACAAATCTGGCCTTATTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGAAAGGAGGAATTCGATTCACAGTAACTGGAAATCCATACTTCAACGAAGTGTTGGTGTGGAACGTTGGAGGAGCTGGAGATGTGACGAACGTGCAAGTGAAGGGTAACAGTAAGCTGAAATGGACCGACATGACTCGTCACTGGGGTCAAAAATGGGTCACCAACTCCATGATGGTTGGTGAGACGCTCACCTTCAGGGTTCGAACCTCTGACGGCAAATTCTCCACCTCATGGCATATTGCTCCCACCAATTGGCAGTTTGGGGTTTACTCTGTCAATTTCACCATTAAAAACAATTGTCAGTTCCCAATCTGGCCGGGAGCCTTGACCGGTGCCGGCAACCAACTGTCAACCACCGGCTTTGAATTATCCCCTGGATCGACGACGACGGTGACCACTTCTCCGCCGTGGTCCGGTAGGTTCTGGGCTCGAACTCTCTGCTCCACAGATGCAACTGGGAAGTTCTCTTGCGGAACCGCTGACTGTGGCTCCGGTCAAGTCATATGCAACGGCGCCGGCGCAATTCCGCCAGCAAGTCTCGTGGAATTCACAATAGCACCAAGTGGCGGCCGAGATTTCTTCGACATCAGCCTCGTCGACGGCTTCAATTTACCGGTTTCAGTGACGCCGTTAGGCGGATCGAGTGAGTGCAAAGCAGTAGTTTGCGCGGAAAATATAAACACCGTTTGTCCACCGGAGTTAGCCGTTAAAGGCCAAGACGGCGCAGTGATTGCTTGTAAAAGTGCTTGTATGGCTTTGAATACGCCGGAATATTGCTGCAGTGGCGAGCACAATCAGCCGCAAACTTGTCCGCCGACGAATTATTCGATGATATTCAAGAATCAATGCCCACAAGCTTATAGTTATGCCTATGATGATAGGACTAGTACGTTTACTTGCACGGGTGGAGCCAATTATGCCATCACATTTTGTCCTTGA 1455 50.65 MTMPIISSSLPSRGMWAYLLIVLLVIAHANAAASQKVVKKKQNKPPFKPGPWKDAHATFYEGGSTTFGGACAYDDVEKEGYGMETAALSDALFNNGTSCGACFEIKCVESTNLCKPGQPSLIVTGTNRCPPNSPHCNPPLEHFDIAKPVFQNIADYKSGLIPITYRRVPCKKKGGIRFTVTGNPYFNEVLVWNVGGAGDVTNVQVKGNSKLKWTDMTRHWGQKWVTNSMMVGETLTFRVRTSDGKFSTSWHIAPTNWQFGVYSVNFTIKNNCQFPIWPGALTGAGNQLSTTGFELSPGSTTTVTTSPPWSGRFWARTLCSTDATGKFSCGTADCGSGQVICNGAGAIPPASLVEFTIAPSGGRDFFDISLVDGFNLPVSVTPLGGSSECKAVVCAENINTVCPPELAVKGQDGAVIACKSACMALNTPEYCCSGEHNQPQTCPPTNYSMIFKNQCPQAYSYAYDDRTSTFTCTGGANYAITFCP 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64268770 64274668 + Hsped.04g09810.1 Hepe04g0981 568119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0981 484 ProSiteProfiles Thaumatin family profile. 263 484 IPR001938 -
Hepe04g0981 484 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 260 IPR007117 -
Hepe04g0981 484 SUPERFAMILY PHL pollen allergen 172 261 IPR036749 -
Hepe04g0981 484 PANTHER EXPANSIN-A15 22 260 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 ProSitePatterns Thaumatin family signature. 325 341 IPR017949 -
Hepe04g0981 484 SMART dpbb_1 85 165 IPR007112 -
Hepe04g0981 484 SUPERFAMILY Osmotin, thaumatin-like protein 265 484 IPR037176 -
Hepe04g0981 484 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Hepe04g0981 484 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576(InterPro)
Hepe04g0981 484 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576(InterPro)
Hepe04g0981 484 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576(InterPro)
Hepe04g0981 484 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
Hepe04g0981 484 Pfam Thaumatin family 270 484 IPR001938 -
Hepe04g0981 484 SMART tha2 266 484 IPR001938 -
Hepe04g0981 484 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 175 IPR007112 -
Hepe04g0981 484 Pfam Lytic transglycolase 85 165 IPR009009 -
Hepe04g0981 484 CDD TLP-PA 266 483 - -
Hepe04g0981 484 Gene3D - 173 266 IPR036749 -
Hepe04g0981 484 FunFam THAUMATIN-LIKE PROTEIN 1 264 484 - -
Hepe04g0981 484 PRINTS Expansin signature 222 243 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 107 118 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 80 94 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 121 131 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 133 150 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 174 186 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 150 163 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 251 267 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 PRINTS Expansin signature 186 207 IPR002963 GO:0009664(InterPro)
Hepe04g0981 484 Pfam Expansin C-terminal domain 176 254 IPR007117 -
Hepe04g0981 484 CDD DPBB_EXPA_N 51 170 - -
Hepe04g0981 484 SUPERFAMILY Barwin-like endoglucanases 51 193 IPR036908 -
Hepe04g0981 484 Gene3D Thaumatin 267 484 IPR037176 -
Hepe04g0981 484 Gene3D - 35 171 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0981 Hepe-Chr4:64268770 Hepe06g0923 Hepe-Chr6:56775009 1.47e-87 dispersed
Hepe04g0980 Hepe-Chr4:64265865 Hepe04g0981 Hepe-Chr4:64268770 6.76e-39 tandem
Hepe04g0981 Hepe-Chr4:64268770 Hepe04g0982 Hepe-Chr4:64276619 9.81e-151 tandem
Hepe04g0981 Hepe-Chr4:64268770 Hepe08g0278 Hepe-Chr8:2518500 1.14e-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0981 - - - 0.0