Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g0991 ATGGAGGCTCTTCTTCTTAACGCACCCATTTCTCATCCACTCGCTCGAAAATGTCTCCTCTCAAACCCACCTTCCATTCCGATCGACAATCGGAACAGAATTAGACTTACCAGGCCGCCATTCATCCAAGCCGTCATTTCAAATCACACCGTTGAGATCTCTCCCAATTCTTCTCTTTCGGACACTTCGATTGCCACTCTTGGAGACGTATTTGTGCCTGCGGCGCCTACCCCTTTGCCGCCTCGCAAAAAGCTGTCGGCTGATTCGCTGCAGTTCCCGCCTGGCTATCTTGGCGCCATTCCGGATCGTTCGGATTCTGATGGTGGCGTGGATAATCTCAACGCCATGGAGTATTTGACTAGAATTTTGGGTTCGAAGGTCTACGATGTGGCTATTGAATCGCCGTTGCAGCTTGCGCCTAAGTTGTCTGAGCGTTTGGGGGTCAATATCTGGCTTAAGAGGGAGGACTTGCAGCCTGTGTTCTCATTCAAGCTCCGAGGAGCTTATAATATGATGGCCAAACTTCCAAGAGAACAGTTGGAACAAGGAGTTATATGCTCGTCAGCTGGAAATCATGCGCAAGGGGTTGCATTAGCTGCTAAGCGATTGAAATGTGATGCTGTGATTGTTATGCCCGTTACTACACCTGAAATTAAGTGGCAATCAGTTCAAAAATTGGGTGCAACTGTTGTTCTTATTGGAGATTCATACGATGAGGCACAAGCATATGCTAAAAAGCGGAGCCTAGAGGAAGGGCGTGCTTTCATACCTCCTTTTGATCACCCTGATGTTATAGCCGGGCAAGGTACAGTTGGGATGGAAATTGTGCGTCAAATGAAGGGCCCATTGCATGCAATTTTTGTGCCAGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAGATTATTGGGGTGGAGCCATCTGATGCAAATGCTATGGCACTATCATTATGTCATGGCCAAAGAGTAATATTGGACAAGGCTGGAGTTTTTGCTGATGGTGTAGCAGTTAAAGAAGTCGGTGAAGAGACCTTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGTGATGCTATATGTGCCTCAATAAAGGATATGTTTGAGGAGAAGAGAAGCATCTTGGAACCTGCAGGCGCTCTTTCTCTTGCTGGAGCCGAGGCATACTGCAAATATTATGGCTTGAAGGGAGAAAATGTTGTGGTAATAACCAGTGGTGCAAATATGAACTTTGACAAACTGAGAATAGTTACTGAACTTGCCAATGTTGGTCGTGAACAAGAGGCTGTGCTCGCAACTATATTGCCGGAGAAACCTGGAAGCTTTAAAAGATTTTGTGAACTGGTTGGACCTATGAACATTACAGAATTCAAGTATAGATATAACTCTGAAGAAAGAGCGGTTGTTCTTTATAGTGTTGGTATGCACATGCCTTCAGAACTTGAAGAAATGATGGACCGGATGAAATCTTCTCAGCTTGAAACTTATAATCTCACAAAGAACGATCTTGTAAAGTATCACTTGCGTCACTTGACGAGAGGCAACTCAAATGTAGAAAACGAAGTTCTTTGTCGTTTTATTTTCCCAGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTCAGTCCTCGCTGGAACATTAGTTTGTTTCACTATCGTGGGCAGGGTGAAACAGGTGCAGATATATTAGTTGGATTTCAGATGGATAAATCAGAGATGGGGGAATTCCACAAATGTGCTAGAAGGGTTGGGTACGAGAAAAATAAAAAAGAAAAAGAAAGAAGGCTGGAGAAAGAACAAAAAGCTGAATCACTTGGATTTTCTTCATACCCTCCTGCTTATTTGAGCCAAGATGCCACTGGAAACAAGCTTTTAACAGGAGCCAACTTTGCTTCTGCTGCTTCTGGCTTTTATGATGGCACTGCTCAGCTCTATCATGCAATTTCTCTAACCCAGCAGTTGAATTATTACAAGGAATATCAAAGTAAAGTTGTAAACATGGTGGGAACAGGGAAAGGCAATGCCATATTCTCTGGTGCAATTCACCTTCTTAGTGCAGGCAGCAGTGATTTCATTCAGAATTACTACGTTAATCCTCTTCTTTACAGAACATACTCACCACAGCAGTTCTCTGACGTTCTCATTACATCTTTCTCAAACTTCATTCAGGGTTTTTTGAGTCAAGAAGGGCTTGCTGTGGAACAGTCCAATCGGGAAGGTGAAGCTGTTGAGCTTTACCTTGCGATGTTGGACTCAGGTATTGAGCCGAATGAATATACTTTTGTATCGATTTTGACTGCTTGTATTCGGAATATGGATTATTATCAGTTAGGTTTACAAGTTCATGGTATTGTCGTCAAATTGGGGTACCTGAATTGTGTTTTCATTTGCAATGCGCTTATGGGGTTCTATAGTAAGTGTGGGTTTTTGGAACTTGTACTTAGATTGTTCGACGAAATGCCTGAGAGAGATATCGCTTCGTGGAATACTGTTATCTCGAGTGTGATGAAGGAGTTTAGGTATGATGAGGCGTTTGATTACTTTCGTGGTATGAGCGAAGTGAGGGGCTTGAGAGTGGATCATTTCTCTCTTTCTACTCTCTTGACTGCCTGCGCTGGCTGTGTTACGCCTATGAAAGGCCAACAACTTCACGCTCTTGCTTTGAAGGTCGGGCTGGAGTCTCATTTGAGCGTGAGCAATTCGCTTATTGGGATTGATTACTACATGGAATTCGGAAAGTTGGATTTGGCAGTCGAAGTATTTATTGTGATGCCGGAGAGGAATTGTATCTCTTATAATGCAGTTTTGGCCGGACTTTCTAAGAATGGCCATGGGTTGAGAGCTCTGGAACTTTTCATTGATATGTTGGAGGGCATGGAAATAACAGATTGCACATTGATTAGCAATATCAATACTTCATTGGTTGACATGTATACAAGGTGTGGGAGGATGGAGGATGCCGAAAGGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATACTAACATCAATGATTTGTGCCTTTGTGGGAGTAGGAAATGCAACAGTTAGCATGTACTCGAAGTGTTGGAATATGGATGATGTCATCAGAGTATTCAATACAATGAACATGAAAGACATTGTTTCCTGGAATAGTTTAGTTGCTGGACATCTGCTTCATAGGCAGGGTGATAAAGCCTTGAGAATCTGCCCGACGATATTACATCTGTTTTCATTATTTCAGCTTACAAACACACTGAATTGA 3294 43.11 MEALLLNAPISHPLARKCLLSNPPSIPIDNRNRIRLTRPPFIQAVISNHTVEISPNSSLSDTSIATLGDVFVPAAPTPLPPRKKLSADSLQFPPGYLGAIPDRSDSDGGVDNLNAMEYLTRILGSKVYDVAIESPLQLAPKLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPREQLEQGVICSSAGNHAQGVALAAKRLKCDAVIVMPVTTPEIKWQSVQKLGATVVLIGDSYDEAQAYAKKRSLEEGRAFIPPFDHPDVIAGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGQRVILDKAGVFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVVITSGANMNFDKLRIVTELANVGREQEAVLATILPEKPGSFKRFCELVGPMNITEFKYRYNSEERAVVLYSVGMHMPSELEEMMDRMKSSQLETYNLTKNDLVKYHLRHLTRGNSNVENEVLCRFIFPERPGALEKFLDAFSPRWNISLFHYRGQGETGADILVGFQMDKSEMGEFHKCARRVGYEKNKKEKERRLEKEQKAESLGFSSYPPAYLSQDATGNKLLTGANFASAASGFYDGTAQLYHAISLTQQLNYYKEYQSKVVNMVGTGKGNAIFSGAIHLLSAGSSDFIQNYYVNPLLYRTYSPQQFSDVLITSFSNFIQGFLSQEGLAVEQSNREGEAVELYLAMLDSGIEPNEYTFVSILTACIRNMDYYQLGLQVHGIVVKLGYLNCVFICNALMGFYSKCGFLELVLRLFDEMPERDIASWNTVISSVMKEFRYDEAFDYFRGMSEVRGLRVDHFSLSTLLTACAGCVTPMKGQQLHALALKVGLESHLSVSNSLIGIDYYMEFGKLDLAVEVFIVMPERNCISYNAVLAGLSKNGHGLRALELFIDMLEGMEITDCTLISNINTSLVDMYTRCGRMEDAERMFHQRSLENDYTAILTSMICAFVGVGNATVSMYSKCWNMDDVIRVFNTMNMKDIVSWNSLVAGHLLHRQGDKALRICPTILHLFSLFQLTNTLN 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 64432857 64445738 + Hsped.04g09910.1 Hepe04g0991 568129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g0991 1097 CDD ACT_ThrD-I_2 534 600 - -
Hepe04g0991 1097 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 116 469 IPR036052 -
Hepe04g0991 1097 Coils Coil 596 616 - -
Hepe04g0991 1097 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 122 603 IPR050147 GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER)
Hepe04g0991 1097 NCBIfam pentatricopeptide repeat 810 839 IPR002885 -
Hepe04g0991 1097 NCBIfam pentatricopeptide repeat 841 873 IPR002885 -
Hepe04g0991 1097 FunFam L-threonine dehydratase 231 413 - -
Hepe04g0991 1097 Gene3D Biosynthetic Threonine Deaminase; Domain 3 441 612 IPR038110 -
Hepe04g0991 1097 ProSiteProfiles ACT-like domain profile. 535 606 IPR001721 -
Hepe04g0991 1097 Gene3D Tetratricopeptide repeat domain 895 986 IPR011990 GO:0005515(InterPro)
Hepe04g0991 1097 Gene3D Tetratricopeptide repeat domain 987 1086 IPR011990 GO:0005515(InterPro)
Hepe04g0991 1097 Gene3D Tetratricopeptide repeat domain 746 894 IPR011990 GO:0005515(InterPro)
Hepe04g0991 1097 SUPERFAMILY ACT-like 532 601 IPR045865 -
Hepe04g0991 1097 Gene3D - 167 258 IPR036052 -
Hepe04g0991 1097 FunFam Threonine dehydratase 441 611 - -
Hepe04g0991 1097 NCBIfam threonine ammonia-lyase, biosynthetic 117 605 IPR005787 GO:0004794(InterPro)|GO:0009097(InterPro)
Hepe04g0991 1097 ProSiteProfiles ACT-like domain profile. 442 513 IPR001721 -
Hepe04g0991 1097 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 155 168 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Hepe04g0991 1097 Pfam PPR repeat 810 839 IPR002885 -
Hepe04g0991 1097 Pfam PPR repeat 986 1006 IPR002885 -
Hepe04g0991 1097 Pfam PPR repeat 944 971 IPR002885 -
Hepe04g0991 1097 Pfam PPR repeat 841 867 IPR002885 -
Hepe04g0991 1097 Pfam Pyridoxal-phosphate dependent enzyme 133 419 IPR001926 -
Hepe04g0991 1097 Pfam C-terminal regulatory domain of Threonine dehydratase 526 607 IPR001721 -
Hepe04g0991 1097 Pfam C-terminal regulatory domain of Threonine dehydratase 432 521 IPR001721 -
Hepe04g0991 1097 CDD ACT_ThrD-I_1 441 524 - -
Hepe04g0991 1097 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 807 841 IPR002885 -
Hepe04g0991 1097 CDD Thr-dehyd 119 423 - -
Hepe04g0991 1097 Gene3D - 135 413 IPR036052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0696 Hepe-Chr4:60675206 Hepe04g0991 Hepe-Chr4:64432857 2.23e-86 dispersed
Hepe04g0989 Hepe-Chr4:64385269 Hepe04g0991 Hepe-Chr4:64432857 1.71e-196 dispersed
Hepe04g0991 Hepe-Chr4:64432857 Hepe04g1066 Hepe-Chr4:65325855 7.10e-289 dispersed
Hepe04g0990 Hepe-Chr4:64404897 Hepe04g0991 Hepe-Chr4:64432857 2.41e-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g0991 K01754 - csv:101205909 1006.9